S6_using_G19

Super-paramagnetic Clustering of 74 points in a 80 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=15)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	16	S823 S825	148.cel
2	4	S823 S825	1076.cel
3	19	S823 S825	1553.cel
4	25	S823 S825	1780.cel
5	50	S825	428.cel
6	18	S825	15.cel
7	66	S825	80.cel
8	70	S825	93.cel
9	3	S824	106.cel
10	12	S824	1430.cel
11	13	S824	1437.cel
12	15	S824	147.cel
13	27	S824	190.cel
14	8	S824	1308.cel
15	10	S824	1360.cel
16	20	S824	155R.cel
17	33	S824	254.cel
18	38	S824	288.cel
19	65	S824	70.cel
20	11	S824	1399.cel
21	61	S824	57.cel
22	1	S824	100R.cel
23	7	S824	129.cel
24	34	S824	269.cel
25	36	S824	283.cel
26	45	S824	349.cel
27	47	S824	360.cel
28	40	S824	300.cel
29	44	S824	345.cel
30	5	S824	12.cel
31	62	S824	574.cel
32	14	S824	1453.cel
33	37	S824	284.cel
34	48	S824	390.cel
35	67	S824	83.cel
36	57	S824	547.cel
37	74	S824	ge205.cel
38	56	S824	528bis.cel
39	9	S821 S822 S824	1317.cel
40	28	S821 S822 S824	218.cel
41	17	S821 S822 S824	1497R.cel
42	30	S821 S822 S824	236.cel
43	41	S821 S822 S824	323.cel
44	32	S821 S822 S824	246.cel
45	29	S821 S822 S824	222.cel
46	73	S821 S822 S824	ge197.cel
47	64	S821 S822 S824	65R.cel
48	60	S821 S822 S824	566.cel
49	68	S821 S822 S824	84.cel
50	6	S821 S822 S824	1284.cel
51	24	S821 S822 S824	1622R.cel
52	22	S821 S822 S824	159.cel
53	42	S821 S822 S824	328.cel
54	46	S821 S822 S824	356bis.cel
55	35	S821 S822 S824	274.cel
56	49	S821 S822 S824	396.cel
57	2	S821 S822 S824	104.cel
58	21	S821 S822 S824	157.cel
59	39	S821 S822 S824	30.cel
60	26	S821 S822 S824	1854R.cel
61	43	S821 S822 S824	344.cel
62	23	S821 S822 S824	1621.cel
63	51	S821 S822 S824	444.cel
64	52	S821 S822 S824	458.cel
65	54	S821 S822 S824	506.cel
66	71	S821 S822 S824	94bis.cel
67	69	S821 S822 S824	90.cel
68	72	S821 S822 S824	97.cel
69	31	S821 S822 S824	242.cel
70	55	S821 S822 S824	527.cel
71	53	S821 S822 S824	461.cel
72	58	S821 S822 S824	558.cel
73	59	S822 S824	563.cel
74	63	S824	63.cel

Genes Names

1	38	218469_at	GREM1 Chr:15q13-q15
2	28	211890_x_at	CAPN3 Chr:15q15.1-q21.1
3	26	210944_s_at	CAPN3 Chr:15q15.1-q21.1
4	33	214475_x_at	CAPN3 Chr:15q15.1-q21.1
5	27	211836_s_at	MOG Chr:6p22-p21.3
6	56	228624_at	FLJ11155 Chr:4q32.1
7	14	204733_at	KLK6 Chr:19q13.3
8	42	219750_at	FLJ11155 Chr:4q32.1
9	36	217613_at	FLJ11155 Chr:4q32.1
10	37	218094_s_at	C20orf35 Chr:20q13.12
11	18	205989_s_at	MOG Chr:6p22-p21.3
12	47	223699_at	CNDP1 Chr:18q22.3
13	6	1562608_at	--- ---
14	50	225822_at	MGC17299 Chr:1p34.1
15	9	204073_s_at	C11orf9 Chr:11q12-q13.1
16	43	220026_at	CLCA4 Chr:1p31-p22
17	20	207323_s_at	MBP Chr:18q23
18	10	204378_at	BCAS1 Chr:20q13.2-q13.3
19	22	209072_at	MBP Chr:18q23
20	2	1555807_a_at	MOG Chr:6p22-p21.3
21	31	213371_at	LDB3 Chr:10q22.3-q23.2
22	25	210657_s_at	PNUTL2 Chr:17q22-q23
23	24	210193_at	MOBP Chr:3p21.33
24	30	212829_at	--- ---
25	7	1565809_x_at	--- Chr:1p36.33
26	70	238498_at	--- ---
27	34	214650_x_at	MOG Chr:6p22-p21.3
28	15	204777_s_at	MAL Chr:2cen-q13
29	58	229781_at	--- ---
30	57	228891_at	LOC349236 Chr:9q22.2
31	78	242765_at	MOBP Chr:3p21.33
32	23	210169_at	KIAA0420 Chr:16p13.3
33	60	231911_at	KIAA1189 Chr:2q24.2
34	21	207659_s_at	MOBP Chr:3p21.33
35	74	241717_at	LOC285281 Chr:3p21.33
36	69	238008_at	MGC35308 Chr:6q27
37	46	223572_at	KIAA1173 Chr:3p21.33
38	61	232388_at	CNTNAP4 Chr:16q23.1
39	1	1553765_a_at	KIAA1900 Chr:6q16.3
40	66	235794_at	MOBP Chr:3p21.33
41	44	221868_at	KIAA1155 Chr:2p13.2
42	4	1557943_at	CNP Chr:17q21
43	3	1557481_a_at	--- ---
44	77	242002_at	TCBA1 Chr:6q21
45	12	204547_at	RAB40B Chr:17q25.3
46	45	222862_s_at	AK5 Chr:1p31
47	64	235342_at	SPOCK3 Chr:4q32.3
48	17	205814_at	GRM3 Chr:7q21.1-q21.2
49	67	236420_s_at	TMEM16D Chr:12q23.3
50	71	239575_at	TMEM10 Chr:10q23-q24
51	75	241833_at	--- ---
52	16	205637_s_at	SH3GL3 Chr:15q24
53	72	240053_x_at	--- ---
54	5	1562473_at	--- ---
55	8	202890_at	MAP7 Chr:6q23.2
56	13	204681_s_at	RAPGEF5 Chr:7p15.3
57	41	219429_at	FA2H Chr:16q23
58	52	227006_at	PPP1R14A Chr:19q13.1
59	65	235476_at	TSBF1 Chr:3q26.1
60	19	207308_at	SLCO1A2 Chr:12p12
61	29	212750_at	PPP1R16B Chr:20q12
62	40	219305_x_at	FBXO2 Chr:1p36.21
63	80	41577_at	PPP1R16B Chr:20q12
64	79	244113_at	--- ---
65	35	214769_at	CLCN4 Chr:Xp22.3
66	39	218651_s_at	FLJ11196 Chr:15q22.32
67	48	224482_s_at	RAB11-FIP4 Chr:17q11.2
68	76	241873_at	UNC5C Chr:4q21-q23
69	51	226018_at	Ells1 Chr:7p15.1
70	54	227440_at	EB-1 Chr:12q23.1-q23.2
71	59	230104_s_at	p25 Chr:5p15.3
72	73	240292_x_at	EB-1 Chr:12q23.1-q23.2
73	53	227439_at	EB-1 Chr:12q23.1-q23.2
74	55	227441_s_at	EB-1 Chr:12q23.1-q23.2
75	62	234261_at	--- ---
76	68	236838_at	--- ---
77	11	204467_s_at	SNCA Chr:4q21
78	49	225727_at	PLEKHH1 Chr:14q24.1
79	63	235236_at	--- ---
80	32	213839_at	KIAA0500 Chr:14q32.2

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	15
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 17:39:22

S6_using_G19

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=15)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC