S6_using_G18

Super-paramagnetic Clustering of 74 points in a 25 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Samples

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=7)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	73	S819 S820			ge197.cel
2	37	S819 S820			284.cel
3	68	S819 S820			84.cel
4	57	S819 S820			547.cel
5	5	S819 S820			12.cel
6	3	S819 S820			106.cel
7	7	S819 S820			129.cel
8	65	S819 S820			70.cel
9	12	S819 S820			1430.cel
10	25	S820			1780.cel
11	41				323.cel
12	47	S818			360.cel
13	20	S818			155R.cel
14	4	S815 S818			1076.cel
15	9	S815 S818			1317.cel
16	16	S815 S818			148.cel
17	19	S815 S818			1553.cel
18	33	S815 S818			254.cel
19	42	S816			328.cel
20	40	S816			300.cel
21	8	S816			1308.cel
22	64	S816			65R.cel
23	28				218.cel
24	30				236.cel
25	46				356bis.cel
26	2	S814			104.cel
27	10	S814			1360.cel
28	17	S814			1497R.cel
29	22	S814			159.cel
30	35	S814			274.cel
31	24	S814			1622R.cel
32	15	S814			147.cel
33	69	S814			90.cel
34	26	S814			1854R.cel
35	71	S814			94bis.cel
36	50	S814			428.cel
37	11	S814			1399.cel
38	6	S814			1284.cel
39	49	S814			396.cel
40	62	S814			574.cel
41	29	S814			222.cel
42	34	S814			269.cel
43	60	S814			566.cel
44	67	S814			83.cel
45	61	S814			57.cel
46	23	S812 S814			1621.cel
47	36	S812 S814			283.cel
48	54	S812 S814			506.cel
49	32	S812 S814			246.cel
50	58	S812 S814			558.cel
51	72	S812 S814			97.cel
52	74				ge205.cel
53	52				458.cel
54	38				288.cel
55	13				1437.cel
56	14				1453.cel
57	53				461.cel
58	27				190.cel
59	31				242.cel
60	39				30.cel
61	43				344.cel
62	59				563.cel
63	1	S813 S817			100R.cel
64	44	S813 S817			345.cel
65	48	S813 S817			390.cel
66	21	S813 S817			157.cel
67	51	S813 S817			444.cel
68	55	S813 S817			527.cel
69	70	S817			93.cel
70	18				15.cel
71	66				80.cel
72	45				349.cel
73	56				528bis.cel
74	63				63.cel

Genes Names

1	6	205741_s_at		DTNA Chr:18q12
2	8	207443_at		NR2E1 Chr:6q21
3	18	217678_at		SLC7A11 Chr:4q28-q32
4	11	209921_at		SLC7A11 Chr:4q28-q32
5	5	205363_at		BBOX1 Chr:11p14.2
6	3	204041_at		MAOB Chr:xp11.23
7	10	209301_at		CA2 Chr:8q22
8	12	210066_s_at		AQP4 Chr:18q11.2-q12.1
9	13	210067_at		AQP4 Chr:18q11.2-q12.1
10	2	203723_at		ITPKB Chr:1q42.13
11	4	204363_at		F3 Chr:1p22-p21
12	7	206022_at		NDP Chr:xp11.4
13	14	210068_s_at		AQP4 Chr:18q11.2-q12.1
14	15	210906_x_at		AQP4 Chr:18q11.2-q12.1
15	1	202800_at		SLC1A3 Chr:5p13
16	16	213395_at		MLC1 Chr:22q13.33
17	17	213618_at		CENTD1 Chr:4p15.1
18	9	207455_at		P2RY1 Chr:3q25.2
19	23	231925_at		--- ---
20	25	238003_at		FLJ25530 Chr:11q24.2
21	19	223605_at		SLC25A18 Chr:22q11.2
22	21	226228_at		AQP4 Chr:18q11.2-q12.1
23	20	226189_at		--- ---
24	22	227084_at		DTNA Chr:18q12
25	24	235795_at		PAX6 Chr:11p13

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	7
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 17:20:04