S6_using_G16

Super-paramagnetic Clustering of 74 points in a 49 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	2		104.cel
2	19	S798	1553.cel
3	16	S798	148.cel
4	4	S798	1076.cel
5	25	S798	1780.cel
6	9	S804 S805	1317.cel
7	73	S801 S804 S805	ge197.cel
8	68	S801 S804 S805	84.cel
9	41	S801 S804 S805	323.cel
10	20	S801 S804 S805	155R.cel
11	3	S803 S804 S805	106.cel
12	30	S803 S804 S805	236.cel
13	33	S803 S804 S805	254.cel
14	47	S803 S804 S805	360.cel
15	10	S803 S804 S805	1360.cel
16	64	S803 S804 S805	65R.cel
17	38	S803 S804 S805	288.cel
18	27	S803 S804 S805	190.cel
19	36	S803 S804 S805	283.cel
20	24	S803 S804 S805	1622R.cel
21	32	S803 S804 S805	246.cel
22	34	S803 S804 S805	269.cel
23	50	S803 S804 S805	428.cel
24	26	S803 S804 S805	1854R.cel
25	29	S803 S804 S805	222.cel
26	74	S803 S804 S805	ge205.cel
27	8	S803 S804 S805	1308.cel
28	7	S803 S804 S805	129.cel
29	23	S803 S804 S805	1621.cel
30	12	S803 S804 S805	1430.cel
31	43	S800 S803 S804 S805	344.cel
32	14	S800 S803 S804 S805	1453.cel
33	40	S800 S803 S804 S805	300.cel
34	31	S800 S803 S804 S805	242.cel
35	51	S800 S803 S804 S805	444.cel
36	72	S800 S803 S804 S805	97.cel
37	21	S800 S803 S804 S805	157.cel
38	22	S800 S803 S804 S805	159.cel
39	65	S800 S803 S804 S805	70.cel
40	11	S800 S803 S804 S805	1399.cel
41	39	S800 S803 S804 S805	30.cel
42	37	S800 S803 S804 S805	284.cel
43	67	S800 S803 S804 S805	83.cel
44	55	S800 S803 S804 S805	527.cel
45	52	S800 S803 S804 S805	458.cel
46	62	S803 S804 S805	574.cel
47	5	S803 S804 S805	12.cel
48	69	S803 S804 S805	90.cel
49	46	S803 S804 S805	356bis.cel
50	42	S803 S804 S805	328.cel
51	45	S803 S804 S805	349.cel
52	57	S803 S804 S805	547.cel
53	6	S799 S803 S804 S805	1284.cel
54	15	S799 S803 S804 S805	147.cel
55	71	S799 S803 S804 S805	94bis.cel
56	17	S799 S803 S804 S805	1497R.cel
57	28	S803 S804 S805	218.cel
58	49	S803 S804 S805	396.cel
59	56	S803 S804 S805	528bis.cel
60	60	S803 S804 S805	566.cel
61	54	S803 S804 S805	506.cel
62	59	S803 S804 S805	563.cel
63	53	S803 S804 S805	461.cel
64	35	S803 S804 S805	274.cel
65	61	S803 S804 S805	57.cel
66	1	S802 S804 S805	100R.cel
67	44	S802 S804 S805	345.cel
68	48	S802 S804 S805	390.cel
69	13	S802 S804 S805	1437.cel
70	58	S802 S804 S805	558.cel
71	18	S805	15.cel
72	66	S805	80.cel
73	70	S805	93.cel
74	63		63.cel

Genes Names

1	15	209291_at	ID4 Chr:6p22-p21
2	16	209292_at	ID4 Chr:6p22-p21
3	41	226933_s_at	ID4 Chr:6p22-p21
4	5	203632_s_at	GPRC5B Chr:16p12
5	14	209170_s_at	GPM6B Chr:xp22.2
6	19	209504_s_at	PLEKHB1 Chr:11q13.5-q14.1
7	11	209167_at	GPM6B Chr:Xp22.2
8	12	209168_at	GPM6B Chr:xp22.2
9	3	203540_at	GFAP Chr:17q21
10	13	209169_at	GPM6B Chr:xp22.2
11	23	209686_at	S100B Chr:21q22.3
12	34	218087_s_at	SORBS1 Chr:10q23.3-q24.1
13	35	218899_s_at	BAALC Chr:8q22.3
14	36	222780_s_at	BAALC Chr:8q22.3
15	4	203562_at	FEZ1 Chr:11q24.2
16	47	231898_x_at	SOX2OT Chr:3q26.3-q27
17	32	216033_s_at	FYN Chr:6q21
18	28	212486_s_at	FYN Chr:6q21
19	8	205433_at	BCHE Chr:3q26.1-q26.2
20	6	204469_at	PTPRZ1 Chr:7q31.3
21	10	206826_at	PMP2 Chr:8q21.3-q22.1
22	48	235127_at	PMP2 Chr:8q21.3-q22.1
23	9	205475_at	SCRG1 Chr:4q31-q32
24	24	209859_at	TRIM9 Chr:14q22.1
25	25	211596_s_at	LRIG1 Chr:3p14
26	27	212070_at	GPR56 Chr:16q13
27	31	214023_x_at	MGC8685 Chr:6p25
28	49	44783_s_at	HEY1 Chr:8q21
29	26	212062_at	ATP9A Chr:20q13.11-q13.2
30	30	213849_s_at	PPP2R2B Chr:5q31-5q32
31	20	209598_at	PNMA2 Chr:8p21.1
32	39	225491_at	SLC1A2 Chr:11p13-p12
33	40	226627_at	38238 Chr:5q31
34	1	1555471_a_at	FMN2 Chr:1q43
35	38	223618_at	FMN2 Chr:1q43
36	2	202986_at	ARNT2 Chr:15q24
37	21	209617_s_at	CTNND2 Chr:5p15.2
38	22	209618_at	CTNND2 Chr:5p15.2
39	18	209470_s_at	GPM6A Chr:4q34
40	43	228546_at	DPP6 Chr:7q36.2-q36.3
41	17	209469_at	GPM6A Chr:4q34
42	46	229053_at	LOC51760 Chr:16p13.11
43	42	228375_at	IGSF11 Chr:3q13.33
44	44	228581_at	KCNJ10 Chr:1q22-q23
45	45	228780_at	POU3F3 Chr:2q12.1
46	37	222803_at	PRTFDC1 Chr:10p12.31
47	7	204471_at	GAP43 Chr:3q13.1-q13.2
48	33	216963_s_at	GAP43 Chr:3q13.1-q13.2
49	29	213721_at	SOX2 Chr:3q26.3-q27

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	9
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 16:34:48

S6_using_G16

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC