S6_using_G15

Super-paramagnetic Clustering of 74 points in a 108 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=20)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	20	S797	155R.cel
2	2	S797	104.cel
3	21	S797	157.cel
4	28	S797	218.cel
5	25	S797	1780.cel
6	31	S797	242.cel
7	30	S797	236.cel
8	10	S796 S797	1360.cel
9	35	S796 S797	274.cel
10	47	S796 S797	360.cel
11	9	S796 S797	1317.cel
12	5	S796 S797	12.cel
13	14	S796 S797	1453.cel
14	15	S796 S797	147.cel
15	17	S796 S797	1497R.cel
16	22	S796 S797	159.cel
17	26	S796 S797	1854R.cel
18	40	S796 S797	300.cel
19	16	S796 S797	148.cel
20	61	S796 S797	57.cel
21	70	S796 S797	93.cel
22	11	S796 S797	1399.cel
23	3	S796 S797	106.cel
24	24	S796 S797	1622R.cel
25	12	S796 S797	1430.cel
26	53	S796 S797	461.cel
27	23	S796 S797	1621.cel
28	57	S796 S797	547.cel
29	1	S796 S797	100R.cel
30	74	S796 S797	ge205.cel
31	45	S796 S797	349.cel
32	6	S796 S797	1284.cel
33	46	S796 S797	356bis.cel
34	71	S796 S797	94bis.cel
35	36	S796 S797	283.cel
36	32	S796 S797	246.cel
37	48	S796 S797	390.cel
38	51	S796 S797	444.cel
39	13	S796 S797	1437.cel
40	54	S796 S797	506.cel
41	39	S796 S797	30.cel
42	58	S796 S797	558.cel
43	66	S796 S797	80.cel
44	69	S796 S797	90.cel
45	8	S796 S797	1308.cel
46	18	S796 S797	15.cel
47	19	S796 S797	1553.cel
48	4	S796 S797	1076.cel
49	44	S796 S797	345.cel
50	34	S796 S797	269.cel
51	52	S796 S797	458.cel
52	59	S796 S797	563.cel
53	27	S796 S797	190.cel
54	42	S796 S797	328.cel
55	55	S796 S797	527.cel
56	7	S796 S797	129.cel
57	29	S796 S797	222.cel
58	37	S796 S797	284.cel
59	49	S796 S797	396.cel
60	67	S796 S797	83.cel
61	72	S796 S797	97.cel
62	62	S796 S797	574.cel
63	43	S796 S797	344.cel
64	50	S796 S797	428.cel
65	60	S796 S797	566.cel
66	63	S796 S797	63.cel
67	56	S796 S797	528bis.cel
68	64	S796 S797	65R.cel
69	41	S797	323.cel
70	65	S797	70.cel
71	33		254.cel
72	38		288.cel
73	68		84.cel
74	73		ge197.cel

Genes Names

1	77	218854_at	SART2 Chr:6q22
2	24	203561_at	FCGR2A Chr:1q23
3	72	217388_s_at	KYNU Chr:2q22.3
4	13	201743_at	CD14 Chr:5q31.1
5	54	211429_s_at	--- ---
6	10	201422_at	IFI30 Chr:19p13.1
7	43	206584_at	LY96 Chr:8q13.3
8	38	204971_at	CSTA Chr:3q21
9	79	219607_s_at	MS4A4A Chr:11q12
10	14	202546_at	VAMP8 Chr:2p12-p11.2
11	86	223280_x_at	MS4A6A Chr:11q12.1
12	89	224356_x_at	MS4A6A Chr:11q12.1
13	16	202833_s_at	SERPINA1 Chr:14q32.1
14	30	204174_at	ALOX5AP Chr:13q12
15	104	230550_at	MS4A6A Chr:11q12.1
16	78	219386_s_at	SLAMF8 Chr:1q23.1
17	11	201487_at	CTSC Chr:11q14.1-q14.3
18	80	219666_at	MS4A6A Chr:11q12.1
19	31	204232_at	FCER1G Chr:1q23
20	51	210176_at	TLR1 Chr:4p14
21	67	214770_at	MSR1 Chr:8p22
22	6	1554899_s_at	FCER1G Chr:1q23
23	15	202803_s_at	ITGB2 Chr:21q22.3
24	8	1555728_a_at	MS4A4A Chr:11q12
25	19	202953_at	C1QB Chr:1p36.3-p34.1
26	76	218232_at	C1QA Chr:1p36.3-p34.1
27	64	213566_at	RNASE6 Chr:14q11.2
28	90	225353_s_at	C1QG Chr:1p36.11
29	60	212588_at	PTPRC Chr:1q31-q32
30	7	1555349_a_at	ITGB2 Chr:21q22.3
31	37	204959_at	MNDA Chr:1q22
32	27	204007_at	FCGR3A Chr:1q23
33	12	201721_s_at	LAPTM5 Chr:1p34
34	35	204787_at	Z39IG Chr:xq12-q13.3
35	28	204122_at	TYROBP Chr:19q13.1
36	17	202901_x_at	CTSS Chr:1q21
37	41	206111_at	RNASE2 Chr:14q24-q31
38	98	228532_at	MGC24133 Chr:1p13.2
39	65	214467_at	GPR65 Chr:14q31-q32.1
40	26	204006_s_at	FCGR3A Chr:1q23
41	1	1552316_a_at	IMAP1 Chr:7q36.1
42	45	208018_s_at	HCK Chr:20q11-q12
43	106	232617_at	CTSS Chr:1q21
44	20	202957_at	HCLS1 Chr:3q13
45	18	202902_s_at	CTSS Chr:1q21
46	33	204446_s_at	ALOX5 Chr:10q11.2
47	99	229560_at	TLR8 Chr:xp22
48	39	205786_s_at	ITGAM Chr:16p11.2
49	82	220330_s_at	SAMSN1 Chr:21q11
50	96	227266_s_at	FYB Chr:5p13.1
51	85	221698_s_at	CLECSF12 Chr:12p13.2-p12.3
52	23	203416_at	CD53 Chr:1p13
53	101	229937_x_at	LILRB1 Chr:19q13.4
54	71	216950_s_at	FCGR1A Chr:1q21.2-q21.3
55	52	210314_x_at	TNFSF13 Chr:17p13.1
56	5	1552807_a_at	SIGLEC10 Chr:19q13.3
57	94	226068_at	SYK Chr:9q22
58	91	225502_at	DOCK8 Chr:9p24.3
59	75	217983_s_at	RNASET2 Chr:6q27
60	21	203104_at	CSF1R Chr:5q33-q35
61	107	232843_s_at	DOCK8 Chr:9p24.3
62	66	214511_x_at	FCGR1A Chr:1q21.2-q21.3
63	97	227346_at	ZNFN1A1 Chr:7p13-p11.1
64	73	217478_s_at	HLA-DMA Chr:6p21.3
65	48	209312_x_at	HLA-DRB1 Chr:6p21.3
66	53	210982_s_at	HLA-DRA Chr:6p21.3
67	69	215193_x_at	HLA-DRB3 Chr:6p21.3
68	46	208306_x_at	HLA-DRB3 Chr:6p21.3
69	47	208894_at	HLA-DRA Chr:6p21.3
70	34	204670_x_at	HLA-DRB3 Chr:6p21.3
71	49	209619_at	CD74 Chr:5q32
72	62	212998_x_at	HLA-DQB1 Chr:6p21.3
73	55	211654_x_at	HLA-DQB1 Chr:6p21.3
74	59	211991_s_at	HLA-DPA1 Chr:6p21.3
75	87	223343_at	MS4A7 Chr:11q12
76	9	201137_s_at	HLA-DPB1 Chr:6p21.3
77	56	211656_x_at	HLA-DQB1 Chr:6p21.3
78	50	209823_x_at	HLA-DQB1 Chr:6p21.3
79	4	1552386_at	FLJ33641 Chr:5q12.1
80	63	213537_at	HLA-DPA1 Chr:6p21.3
81	61	212671_s_at	HLA-DQA1 Chr:6p21.3
82	95	227265_at	--- ---
83	58	211990_at	HLA-DPA1 Chr:6p21.3
84	103	230391_at	--- ---
85	81	220146_at	TLR7 Chr:xp22.3
86	40	205997_at	ADAM28 Chr:8p21.2
87	88	223620_at	GPR34 Chr:xp11.4-p11.3
88	57	211742_s_at	EVI2B Chr:17q11.2
89	100	229723_at	TAGAP Chr:6q25.3
90	29	204150_at	STAB1 Chr:3p21.31
91	108	38487_at	STAB1 Chr:3p21.31
92	102	230252_at	GPR92 Chr:12p13.31
93	42	206420_at	IGSF6 Chr:16p12-p13
94	105	230925_at	APBB1IP Chr:10p12.2
95	25	203645_s_at	CD163 Chr:12p13.3
96	68	215049_x_at	CD163 Chr:12p13.3
97	84	221210_s_at	NPL Chr:1q25
98	22	203305_at	F13A1 Chr:6p25.3-p24.3
99	92	225646_at	CTSC Chr:11q14.1-q14.3
100	93	225647_s_at	CTSC Chr:11q14.1-q14.3
101	2	1552365_at	SCIN Chr:7p21.3
102	32	204430_s_at	SLC2A5 Chr:1p36.2
103	44	207655_s_at	BLNK Chr:10q23.2-q23.33
104	70	216233_at	CD163 Chr:12p13.3
105	3	1552367_a_at	SCIN Chr:7p21.3
106	36	204834_at	FGL2 Chr:7q11.23
107	74	217767_at	C3 Chr:19p13.3-p13.2
108	83	220532_s_at	LR8 Chr:7q36.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	20
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 16:09:04

S6_using_G15

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=20)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC