S6_using_G14

Super-paramagnetic Clustering of 74 points in a 26 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	16	S783 S789 S795	148.cel
2	19	S783 S789 S795	1553.cel
3	25	S783 S789 S795	1780.cel
4	4	S783 S789 S795	1076.cel
5	1	S789 S795	100R.cel
6	59	S789 S795	563.cel
7	66	S784 S787 S795	80.cel
8	31	S784 S787 S795	242.cel
9	8	S784 S787 S795	1308.cel
10	39	S784 S787 S795	30.cel
11	7	S784 S787 S795	129.cel
12	62	S784 S787 S795	574.cel
13	45	S784 S787 S795	349.cel
14	24	S784 S787 S795	1622R.cel
15	44	S784 S787 S795	345.cel
16	40	S784 S787 S795	300.cel
17	9	S784 S787 S795	1317.cel
18	12	S784 S787 S795	1430.cel
19	74	S784 S787 S795	ge205.cel
20	34	S784 S787 S795	269.cel
21	48	S784 S787 S795	390.cel
22	13	S784 S787 S795	1437.cel
23	69	S784 S787 S795	90.cel
24	5	S784 S787 S795	12.cel
25	57	S784 S787 S795	547.cel
26	21	S784 S787 S795	157.cel
27	11	S784 S787 S795	1399.cel
28	46	S784 S787 S795	356bis.cel
29	22	S784 S787 S795	159.cel
30	49	S784 S787 S795	396.cel
31	52	S784 S787 S795	458.cel
32	17	S784 S787 S795	1497R.cel
33	30	S784 S787 S795	236.cel
34	50	S784 S787 S795	428.cel
35	3	S784 S787 S795	106.cel
36	51	S784 S787 S795	444.cel
37	23	S784 S787 S795	1621.cel
38	29	S784 S787 S795	222.cel
39	70	S787 S795	93.cel
40	42	S795	328.cel
41	55	S795	527.cel
42	54	S795	506.cel
43	47	S795	360.cel
44	41	S795	323.cel
45	27	S792 S795	190.cel
46	14	S792 S795	1453.cel
47	56	S792 S795	528bis.cel
48	53	S792 S795	461.cel
49	2	S791 S795	104.cel
50	10	S791 S795	1360.cel
51	38	S791 S795	288.cel
52	58	S791 S795	558.cel
53	33	S795	254.cel
54	73	S795	ge197.cel
55	6	S790 S795	1284.cel
56	61	S790 S795	57.cel
57	15	S790 S795	147.cel
58	35	S790 S795	274.cel
59	43	S795	344.cel
60	67	S786 S788 S795	83.cel
61	71	S786 S788 S795	94bis.cel
62	36	S786 S788 S795	283.cel
63	37	S786 S788 S795	284.cel
64	72	S788 S795	97.cel
65	26		1854R.cel
66	18	S785 S793 S794	15.cel
67	28	S785 S793 S794	218.cel
68	68	S785 S793 S794	84.cel
69	60	S785 S793 S794	566.cel
70	65	S793 S794	70.cel
71	63	S794	63.cel
72	20		155R.cel
73	64		65R.cel
74	32		246.cel

Genes Names

1	1	203180_at	ALDH1A3 Chr:15q26.3
2	2	203434_s_at	MME Chr:3q25.1-q25.2
3	6	205619_s_at	MEOX1 Chr:17q21
4	21	231766_s_at	COL12A1 Chr:6q12-q13
5	5	205431_s_at	BMP5 Chr:6p12.1
6	3	204776_at	THBS4 Chr:5q13
7	4	205430_at	BMP5 Chr:6p12.1
8	7	205713_s_at	COMP Chr:19p13.1
9	24	236035_at	--- ---
10	8	205848_at	GAS2 Chr:11p14.3-p15.2
11	12	218499_at	MST4 Chr:xq26.2
12	23	235944_at	FIBL-6 Chr:1q25.3
13	9	212414_s_at	38236 Chr:xq25
14	10	213456_at	SOSTDC1 Chr:7p21.2
15	25	239468_at	C10orf48 Chr:10p12.1
16	26	244885_at	EBF2 Chr:8p21.2
17	14	220014_at	LOC51334 Chr:5q23.2
18	15	220065_at	TNMD Chr:xq21.33-q23
19	16	226834_at	ASAM Chr:11q24.1
20	22	232090_at	--- ---
21	13	219837_s_at	C17 Chr:4p16-p15
22	17	226930_at	FNDC1 Chr:6q25
23	18	227070_at	LOC83468 Chr:12q
24	11	217525_at	UNQ564 Chr:11p15.4
25	19	227850_x_at	CDC42EP5 Chr:19q13.42
26	20	229839_at	MGC45780 Chr:8p21.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	9
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 15:51:41

S6_using_G14

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=9)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC