S6_using_G13

Super-paramagnetic Clustering of 74 points in a 39 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=15)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	35		274.cel
2	17		1497R.cel
3	4	S779 S781 S782	1076.cel
4	16	S779 S781 S782	148.cel
5	19	S779 S781 S782	1553.cel
6	25	S779 S781 S782	1780.cel
7	9	S780 S781 S782	1317.cel
8	20	S778 S780 S781 S782	155R.cel
9	33	S778 S780 S781 S782	254.cel
10	38	S778 S780 S781 S782	288.cel
11	2	S777 S778 S780 S781 S782	104.cel
12	36	S777 S778 S780 S781 S782	283.cel
13	14	S777 S778 S780 S781 S782	1453.cel
14	24	S777 S778 S780 S781 S782	1622R.cel
15	30	S777 S778 S780 S781 S782	236.cel
16	21	S777 S778 S780 S781 S782	157.cel
17	32	S777 S778 S780 S781 S782	246.cel
18	22	S777 S778 S780 S781 S782	159.cel
19	55	S777 S778 S780 S781 S782	527.cel
20	28	S777 S778 S780 S781 S782	218.cel
21	31	S777 S778 S780 S781 S782	242.cel
22	1	S776 S777 S778 S780 S781 S782	100R.cel
23	13	S776 S777 S778 S780 S781 S782	1437.cel
24	27	S776 S777 S778 S780 S781 S782	190.cel
25	29	S776 S777 S778 S780 S781 S782	222.cel
26	7	S776 S777 S778 S780 S781 S782	129.cel
27	34	S776 S777 S778 S780 S781 S782	269.cel
28	6	S776 S777 S778 S780 S781 S782	1284.cel
29	49	S776 S777 S778 S780 S781 S782	396.cel
30	42	S776 S777 S778 S780 S781 S782	328.cel
31	50	S776 S777 S778 S780 S781 S782	428.cel
32	23	S776 S777 S778 S780 S781 S782	1621.cel
33	39	S776 S777 S778 S780 S781 S782	30.cel
34	46	S776 S777 S778 S780 S781 S782	356bis.cel
35	43	S776 S777 S778 S780 S781 S782	344.cel
36	69	S776 S777 S778 S780 S781 S782	90.cel
37	8	S776 S777 S778 S780 S781 S782	1308.cel
38	41	S776 S777 S778 S780 S781 S782	323.cel
39	11	S776 S777 S778 S780 S781 S782	1399.cel
40	15	S776 S777 S778 S780 S781 S782	147.cel
41	61	S776 S777 S778 S780 S781 S782	57.cel
42	47	S776 S777 S778 S780 S781 S782	360.cel
43	26	S776 S777 S778 S780 S781 S782	1854R.cel
44	48	S776 S777 S778 S780 S781 S782	390.cel
45	53	S776 S777 S778 S780 S781 S782	461.cel
46	58	S776 S777 S778 S780 S781 S782	558.cel
47	74	S776 S777 S778 S780 S781 S782	ge205.cel
48	44	S776 S777 S778 S780 S781 S782	345.cel
49	56	S776 S777 S778 S780 S781 S782	528bis.cel
50	65	S776 S777 S778 S780 S781 S782	70.cel
51	57	S776 S777 S778 S780 S781 S782	547.cel
52	71	S776 S777 S778 S780 S781 S782	94bis.cel
53	68	S776 S777 S778 S780 S781 S782	84.cel
54	73	S776 S777 S778 S780 S781 S782	ge197.cel
55	60	S777 S778 S780 S781 S782	566.cel
56	70	S777 S778 S780 S781 S782	93.cel
57	51	S777 S778 S780 S781 S782	444.cel
58	10	S777 S778 S780 S781 S782	1360.cel
59	64	S777 S778 S780 S781 S782	65R.cel
60	52	S777 S778 S780 S781 S782	458.cel
61	54	S777 S778 S780 S781 S782	506.cel
62	72	S782	97.cel
63	67	S782	83.cel
64	18		15.cel
65	45		349.cel
66	62		574.cel
67	5		12.cel
68	37		284.cel
69	12		1430.cel
70	66		80.cel
71	59		563.cel
72	40		300.cel
73	3		106.cel
74	63		63.cel

Genes Names

1	4	201131_s_at	CDH1 Chr:16q22.1
2	12	206100_at	CPM Chr:12q14.3
3	5	202246_s_at	CDK4 Chr:12q14
4	6	203226_s_at	SAS Chr:12q13.3
5	7	203227_s_at	SAS Chr:12q13.3
6	1	1555385_at	GALGT Chr:12q13.3
7	19	214951_at	SLC26A10 Chr:12q13
8	13	206435_at	GALGT Chr:12q13.3
9	3	200714_x_at	OS-9 Chr:12q13
10	20	215399_s_at	OS-9 Chr:12q13
11	15	212656_at	TSFM Chr:12q13-q14
12	17	214331_at	TSFM Chr:12q13-q14
13	18	214332_s_at	TSFM Chr:12q13-q14
14	2	1568706_s_at	--- ---
15	10	205539_at	AVIL Chr:12q13.2
16	27	226546_at	--- ---
17	36	238999_at	--- ---
18	14	211832_s_at	MDM2 Chr:12q14.3-q15
19	21	217373_x_at	MDM2 Chr:12q14.3-q15
20	22	217542_at	MGC5370 Chr:12q14.3
21	9	205386_s_at	MDM2 Chr:12q14.3-q15
22	25	225160_x_at	MGC5370 Chr:12q14.3
23	29	229711_s_at	MGC5370 Chr:12q14.3
24	35	238733_at	--- ---
25	23	218768_at	NUP107 Chr:12q14.3
26	28	227678_at	KUB3 Chr:12q13.2
27	37	241765_at	CPM Chr:12q14.3
28	8	204027_s_at	METTL1 Chr:12q13
29	11	205676_at	CYP27B1 Chr:12q13.1-q13.3
30	16	213861_s_at	DKFZP586D0919 Chr:12q13.2
31	26	226454_at	LOC92979 Chr:12q13.2
32	30	229917_at	--- ---
33	31	230001_at	LOC92979 Chr:12q13.2
34	34	235721_at	DTX3 Chr:12q13.2
35	38	244675_at	RGS8 Chr:1q25
36	32	235019_at	CPM Chr:12q14.3
37	33	235706_at	CPM Chr:12q14.3
38	24	224489_at	LOC284058 Chr:17q21.32
39	39	AFFX-M27830_5_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	15
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 15:26:06

S6_using_G13

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=15)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC