S6_using_G12

Super-paramagnetic Clustering of 74 points in a 80 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	4	S771 S775	1076.cel
2	16	S771 S775	148.cel
3	18	S771 S775	15.cel
4	66	S771 S775	80.cel
5	19	S775	1553.cel
6	25	S775	1780.cel
7	9	S774	1317.cel
8	10	S774	1360.cel
9	13	S774	1437.cel
10	22	S774	159.cel
11	33	S772 S774	254.cel
12	8	S772 S774	1308.cel
13	34	S772 S774	269.cel
14	23	S772 S774	1621.cel
15	24	S772 S774	1622R.cel
16	26	S772 S774	1854R.cel
17	71	S772 S774	94bis.cel
18	27	S772 S774	190.cel
19	28	S772 S774	218.cel
20	36	S772 S774	283.cel
21	2	S772 S774	104.cel
22	20	S772 S774	155R.cel
23	6	S772 S774	1284.cel
24	29	S772 S774	222.cel
25	54	S772 S774	506.cel
26	32	S772 S774	246.cel
27	14	S772 S774	1453.cel
28	41	S772 S774	323.cel
29	49	S772 S774	396.cel
30	39	S772 S774	30.cel
31	31	S772 S774	242.cel
32	55	S772 S774	527.cel
33	11	S772 S774	1399.cel
34	12	S772 S774	1430.cel
35	44	S772 S774	345.cel
36	5	S772 S774	12.cel
37	63	S772 S774	63.cel
38	42	S772 S774	328.cel
39	61	S772 S774	57.cel
40	74	S772 S774	ge205.cel
41	70	S772 S774	93.cel
42	3	S772 S774	106.cel
43	37	S772 S774	284.cel
44	57	S772 S774	547.cel
45	62	S772 S774	574.cel
46	59	S772 S774	563.cel
47	67	S772 S774	83.cel
48	47	S772 S774	360.cel
49	56	S772 S774	528bis.cel
50	58	S772 S774	558.cel
51	52	S772 S774	458.cel
52	48	S772 S774	390.cel
53	65	S772 S774	70.cel
54	1	S772 S774	100R.cel
55	50	S772 S774	428.cel
56	15	S772 S774	147.cel
57	60	S772 S774	566.cel
58	69	S772 S774	90.cel
59	64	S772 S774	65R.cel
60	72	S772 S774	97.cel
61	30	S772 S774	236.cel
62	38	S772 S774	288.cel
63	68	S772 S774	84.cel
64	43	S772 S774	344.cel
65	21	S774	157.cel
66	46	S774	356bis.cel
67	40	S774	300.cel
68	7	S774	129.cel
69	45	S774	349.cel
70	17	S773 S774	1497R.cel
71	35	S773 S774	274.cel
72	53	S773 S774	461.cel
73	51	S773 S774	444.cel
74	73	S773 S774	ge197.cel

Genes Names

1	56	225415_at	BBAP Chr:3q21.1
2	53	223220_s_at	BAL Chr:3q13-q21
3	63	228531_at	FLJ20073 Chr:7q21.3
4	33	209417_s_at	IFI35 Chr:17q21
5	16	203148_s_at	TRIM14 Chr:9q31.1
6	62	228152_s_at	FLJ31033 Chr:4q32.3
7	42	214453_s_at	IFI44 Chr:1p31.1
8	47	218986_s_at	FLJ20035 Chr:4q32.3
9	45	218543_s_at	ZC3HDC1 Chr:7q34
10	70	232375_at	--- ---
11	48	219209_at	MDA5 Chr:2p24.3-q24.3
12	46	218943_s_at	DDX58 Chr:9p12
13	3	200887_s_at	STAT1 Chr:2q32.2
14	79	AFFX-HUMISGF3A/M97935_3_at	STAT1 Chr:2q32.2
15	80	AFFX-HUMISGF3A/M97935_MB_at	STAT1 Chr:2q32.2
16	35	209969_s_at	STAT1 Chr:2q32.2
17	51	219684_at	IFRG28 Chr:3q28
18	27	205552_s_at	OAS1 Chr:12q24.1
19	52	219863_at	CEB1 Chr:4q22.1-q23
20	71	235157_at	--- ---
21	44	218400_at	OAS3 Chr:12q24.2
22	25	204994_at	MX2 Chr:21q22.3
23	24	204972_at	OAS2 Chr:12q24.2
24	64	228607_at	OAS2 Chr:12q24.2
25	6	202086_at	MX1 Chr:21q22.3
26	23	204439_at	C1orf29 Chr:1p31.1
27	15	202869_at	OAS1 Chr:12q24.1
28	26	205483_s_at	G1P2 Chr:1p36.33
29	72	235276_at	EPSTI1 Chr:13q13.3
30	40	213797_at	cig5 Chr:2p25.2
31	49	219211_at	USP18 Chr:22q11.21
32	22	204415_at	G1P3 Chr:1p35
33	10	202411_at	IFI27 Chr:14q32
34	76	242625_at	cig5 Chr:2p25.2
35	59	226702_at	LOC129607 Chr:2p25.2
36	66	229450_at	IFIT4 Chr:10q24
37	50	219352_at	FLJ20637 Chr:4q22.1
38	60	226757_at	IFIT2 Chr:10q23-q25
39	17	203153_at	IFIT1 Chr:10q25-q26
40	58	226603_at	FLJ39885 Chr:7q21.3
41	67	230036_at	FLJ39885 Chr:7q21.3
42	18	203964_at	NMI Chr:2p24.3-q21.3
43	57	226474_at	NOD27 Chr:16q13
44	32	209040_s_at	PSMB8 Chr:6p21.3
45	21	204279_at	PSMB9 Chr:6p21.3
46	9	202307_s_at	TAP1 Chr:6p21.3
47	78	38241_at	BTN3A3 Chr:6p21.3
48	5	201641_at	BST2 Chr:19p13.2
49	73	235643_at	FLJ39885 Chr:7q21.3
50	77	243271_at	--- ---
51	39	213293_s_at	TRIM22 Chr:11p15
52	14	202864_s_at	SP100 Chr:2q37.1
53	13	202863_at	SP100 Chr:2q37.1
54	11	202430_s_at	PLSCR1 Chr:3q23
55	12	202446_s_at	PLSCR1 Chr:3q23
56	36	210705_s_at	TRIM5 Chr:11p15
57	34	209846_s_at	BTN3A2 Chr:6p22.1
58	43	217933_s_at	LAP3 Chr:4p15.33
59	75	241916_at	PLSCR1 Chr:3q23
60	7	202269_x_at	GBP1 Chr:1p22.2
61	20	204205_at	APOBEC3G Chr:22q13.1-q13.2
62	8	202270_at	GBP1 Chr:1p22.2
63	68	231577_s_at	GBP1 Chr:1p22.2
64	38	211911_x_at	HLA-C Chr:6p21.3
65	31	208729_x_at	HLA-B Chr:6p21.3
66	37	211368_s_at	CASP1 Chr:11q23
67	19	204070_at	RARRES3 Chr:11q23
68	2	1552703_s_at	CASP1 Chr:11q23
69	4	200904_at	HLA-E Chr:6p21.3
70	1	1552701_a_at	COP Chr:11q22
71	28	206011_at	CASP1 Chr:11q23
72	69	232024_at	HIMAP2 Chr:7q36.1
73	29	206082_at	HCP5 Chr:6p21.3
74	41	214059_at	IFI44 Chr:1p31.1
75	74	239587_at	--- ---
76	65	228617_at	HSXIAPAF1 Chr:17p13.2
77	30	206133_at	HSXIAPAF1 Chr:17p13.2
78	54	223434_at	GBP3 Chr:1p22.2
79	55	225171_at	ARHGAP18 Chr:6q23.1
80	61	227458_at	PDCD1LG1 Chr:9p24

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	10
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 15:03:25

S6_using_G12

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC