S6_using_G11

Super-paramagnetic Clustering of 74 points in a 15 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Reordered Distance Matrix
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Samples
  • Genes
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=10)

     

    Reordered Distance Matrix

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Samples

    116 S768 S769148.cel
    24 S768 S7691076.cel
    325 S768 S7691780.cel
    419 S768 S7691553.cel
    538 S769288.cel
    620 S769155R.cel
    764 S76965R.cel
    837 S766 S770284.cel
    911 S766 S7701399.cel
    1067 S766 S77083.cel
    113 S766 S770106.cel
    1257 S770547.cel
    135 S77012.cel
    147 S770129.cel
    1540 S770300.cel
    1626 S7701854R.cel
    1712 S7701430.cel
    1839 S77030.cel
    1930 S770236.cel
    2041 S770323.cel
    212 S770104.cel
    2214 S7701453.cel
    2318 S77015.cel
    2428 S770218.cel
    2527 S770190.cel
    2632 S770246.cel
    2733 S770254.cel
    2836 S770283.cel
    2960 S770566.cel
    3010 S7701360.cel
    3153 S770461.cel
    3254 S770506.cel
    3313 S7701437.cel
    3451 S770444.cel
    351 S767 S770100R.cel
    3643 S767 S770344.cel
    3748 S767 S770390.cel
    3858 S767 S770558.cel
    3970 S767 S77093.cel
    4065 S767 S77070.cel
    4161 S77057.cel
    4268 S77084.cel
    4373 S770ge197.cel
    4429 S770222.cel
    458 S7701308.cel
    4615 S770147.cel
    4723 S7701621.cel
    4835 S770274.cel
    4924 S7701622R.cel
    5071 S77094bis.cel
    5131 S770242.cel
    5242 S770328.cel
    5317 S7701497R.cel
    5421 S770157.cel
    556 S7701284.cel
    5634 S770269.cel
    5752 S770458.cel
    5869 S77090.cel
    5946 S770356bis.cel
    6050 S770428.cel
    6174 S770ge205.cel
    6244 S770345.cel
    639 S7701317.cel
    6447 S770360.cel
    6555 S770527.cel
    6656 S770528bis.cel
    6722 S770159.cel
    6859 S770563.cel
    6966 S77080.cel
    7049 S770396.cel
    7172 S77097.cel
    7245 S770349.cel
    7362 S770574.cel
    7463 63.cel

    Genes Names

    18206915_atNKX2-2 Chr:20pter-q11.23
    22201416_atSOX4 Chr:6p22.3
    33201417_atSOX4 Chr:6p22.3
    411569316_at--- ---
    54204913_s_atSOX11 Chr:2p25
    65204914_s_atSOX11 Chr:2p25
    76204915_s_atSOX11 Chr:2p25
    814229700_atLOC148203 Chr:19p13.11
    97205347_s_atTMSNB Chr:xq21.33-q22.3
    1012228144_atZNF300 Chr:5q33.1
    119213668_s_atSOX4 Chr:6p22.3
    1211227921_at--- ---
    1310220898_at--- ---
    1415232668_at--- ---
    1513228790_atMGC39325 Chr:8q12.1

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)10
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size1

    Created by SPC_HTML_REPORT on 13-Aug-2004 14:43:19