S6_using_G10

Super-paramagnetic Clustering of 74 points in a 95 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	13	S761	1437.cel
2	4	S761	1076.cel
3	16	S761	148.cel
4	19	S761	1553.cel
5	25	S761	1780.cel
6	7	S763 S764 S765	129.cel
7	11	S763 S764 S765	1399.cel
8	8	S763 S764 S765	1308.cel
9	27	S763 S764 S765	190.cel
10	1	S763 S764 S765	100R.cel
11	18	S763 S764 S765	15.cel
12	34	S763 S764 S765	269.cel
13	44	S763 S764 S765	345.cel
14	61	S763 S764 S765	57.cel
15	36	S764 S765	283.cel
16	12	S765	1430.cel
17	40	S765	300.cel
18	31	S759 S762 S765	242.cel
19	17	S759 S762 S765	1497R.cel
20	68	S759 S762 S765	84.cel
21	6	S759 S762 S765	1284.cel
22	9	S759 S762 S765	1317.cel
23	28	S759 S762 S765	218.cel
24	60	S759 S762 S765	566.cel
25	20	S759 S762 S765	155R.cel
26	22	S759 S762 S765	159.cel
27	46	S759 S762 S765	356bis.cel
28	32	S759 S762 S765	246.cel
29	2	S759 S762 S765	104.cel
30	51	S759 S762 S765	444.cel
31	52	S759 S762 S765	458.cel
32	64	S759 S762 S765	65R.cel
33	33	S759 S762 S765	254.cel
34	55	S759 S762 S765	527.cel
35	24	S759 S762 S765	1622R.cel
36	30	S759 S762 S765	236.cel
37	23	S759 S762 S765	1621.cel
38	39	S759 S762 S765	30.cel
39	49	S759 S762 S765	396.cel
40	72	S759 S762 S765	97.cel
41	42	S759 S762 S765	328.cel
42	43	S759 S762 S765	344.cel
43	35	S759 S762 S765	274.cel
44	15	S759 S762 S765	147.cel
45	21	S759 S762 S765	157.cel
46	59	S759 S762 S765	563.cel
47	45	S759 S762 S765	349.cel
48	69	S759 S762 S765	90.cel
49	65	S759 S762 S765	70.cel
50	71	S759 S762 S765	94bis.cel
51	29	S759 S762 S765	222.cel
52	63	S759 S762 S765	63.cel
53	26	S759 S762 S765	1854R.cel
54	50	S759 S762 S765	428.cel
55	53	S759 S762 S765	461.cel
56	10	S759 S762 S765	1360.cel
57	54	S759 S762 S765	506.cel
58	14	S759 S762 S765	1453.cel
59	41	S759 S762 S765	323.cel
60	57	S759 S762 S765	547.cel
61	67	S759 S762 S765	83.cel
62	3	S762 S765	106.cel
63	47	S762 S765	360.cel
64	70	S765	93.cel
65	37	S760 S765	284.cel
66	38	S758 S760 S765	288.cel
67	58	S758 S760 S765	558.cel
68	66	S758 S760 S765	80.cel
69	48	S758 S760 S765	390.cel
70	74	S758 S760 S765	ge205.cel
71	73	S760 S765	ge197.cel
72	56	S765	528bis.cel
73	5	S765	12.cel
74	62	S765	574.cel

Genes Names

1	14	203798_s_at	VSNL1 Chr:2p24.3
2	66	228262_at	FLJ14503 Chr:xp22.13
3	28	206376_at	SLC6A15 Chr:12q21.3
4	65	227702_at	CYP4X1 Chr:1p33
5	29	206456_at	GABRA5 Chr:15q11.2-q12
6	93	243929_at	--- ---
7	52	219937_at	TRHDE Chr:12q15-q21
8	44	214945_at	NY-REN-7 Chr:5q35.3
9	7	1556366_s_at	FLJ33708 Chr:6p24.3
10	49	219425_at	SULT4A1 Chr:22q13.2-q13.31
11	3	1553864_at	DKFZp761H2121 Chr:10q26.13
12	30	206678_at	GABRA1 Chr:5q34-q35
13	77	233002_at	KIAA1622 Chr:14q32.2
14	71	230137_at	FLJ30834 Chr:4q27
15	53	220030_at	STYK1 Chr:12p13.31
16	31	206780_at	GAD2 Chr:10p11.23
17	6	1556351_at	HCN1 Chr:5p12
18	4	1556095_at	UNC13C Chr:15q21.1
19	17	204081_at	NRGN Chr:11q24
20	39	213921_at	SST Chr:3q28
21	22	205113_at	NEF3 Chr:8p21
22	18	204229_at	SLC17A7 Chr:19q13
23	90	242404_at	--- ---
24	1	1552714_at	CREG2 Chr:2q12.1
25	75	231489_x_at	--- ---
26	26	205827_at	CCK Chr:3p22-p21.3
27	94	244118_at	GABRA1 Chr:5q34-q35
28	2	1553422_s_at	A2BP1 Chr:16p13.3
29	8	1557122_s_at	--- ---
30	60	224650_at	MAL2 Chr:8q23
31	16	203999_at	SYT1 Chr:12cen-q21
32	37	210247_at	SYN2 Chr:3p25
33	76	232426_at	--- ---
34	95	52837_at	KIAA1644 Chr:22q13
35	54	220359_s_at	ARPP-21 Chr:3p22.1
36	55	221217_s_at	A2BP1 Chr:16p13.3
37	15	203998_s_at	SYT1 Chr:12cen-q21
38	36	210227_at	DLGAP2 Chr:8p23
39	5	1556096_s_at	UNC13C Chr:15q21.1
40	73	230551_at	--- ---
41	80	237384_x_at	--- ---
42	79	236456_at	PTPN5 Chr:11p15.1
43	89	241807_x_at	--- ---
44	24	205635_at	HAPIP Chr:3q21.2
45	40	214044_at	RYR2 Chr:1q42.1-q43
46	10	1568612_at	GABRG2 Chr:5q31.1-q33.1
47	67	229039_at	SYN2 Chr:3p25
48	19	204546_at	KIAA0513 Chr:16q24.1
49	12	202507_s_at	SNAP25 Chr:20p12-p11.2
50	51	219671_at	HPCAL4 Chr:1p34.2
51	62	226086_at	SYT13 Chr:11p12-p11
52	23	205414_s_at	KIAA0672 Chr:17p12
53	50	219659_at	ATP8A2 Chr:13q12-13
54	35	210040_at	SLC12A5 Chr:20q13.12
55	87	241399_at	TAFA2 Chr:12q13.3-q14.1
56	61	225111_s_at	NAPB Chr:20p12.3-p11.21
57	85	239765_at	--- ---
58	64	227053_at	PACSIN1 Chr:6p21.3
59	45	214956_at	--- ---
60	83	239357_at	--- ---
61	41	214098_at	KIAA1107 Chr:1p22.1
62	43	214811_at	KIAA0318 Chr:12q24.33
63	59	224209_s_at	GDA Chr:9q21.11-21.33
64	25	205691_at	SYNGR3 Chr:16p13
65	33	209726_at	CA11 Chr:19q13.3
66	84	239579_at	ABHD7 Chr:1p22.1
67	58	224164_at	TPM3 Chr:1q21.2
68	68	229254_at	DKFZp761N1114 Chr:1q32.1
69	88	241672_at	LOC400120 Chr:13q13.2
70	46	215241_at	TMEM16C Chr:11p14.3
71	11	202260_s_at	STXBP1 Chr:9q34.1
72	27	206196_s_at	RPIP8 Chr:17q21.31
73	56	223529_at	SYT4 Chr:18q12.3
74	20	204722_at	SCN3B Chr:11q24.1
75	42	214230_at	CDC42 Chr:1p36.1
76	78	235066_at	MAP4 Chr:3p21
77	57	223654_s_at	BRUNOL4 Chr:18q12
78	82	238966_at	BRUNOL4 Chr:18q12
79	34	210016_at	MYT1L Chr:2p25.3
80	69	229300_at	--- ---
81	92	243666_at	BRUNOL4 Chr:18q12
82	13	202712_s_at	CKMT1 Chr:15q15
83	21	204723_at	SCN3B Chr:11q24.1
84	72	230262_at	--- ---
85	91	242999_at	ARHGEF7 Chr:13q34
86	32	209556_at	NCDN Chr:1p34.3
87	63	226382_at	LOC283070 Chr:10p14
88	9	1559545_at	--- ---
89	47	218623_at	HMP19 Chr:5q35.2
90	70	230076_at	FLJ10156 Chr:17p13.2
91	81	238786_at	--- ---
92	38	213904_at	--- ---
93	48	219308_s_at	AK5 Chr:1p31
94	74	230698_at	--- ---
95	86	239767_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	12
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 14:24:21

S6_using_G10

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC