S5_using_G8

Super-paramagnetic Clustering of 73 points in a 91 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=18)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	30		236.cel
2	21		157.cel
3	2		104.cel
4	28		218.cel
5	25		1780.cel
6	31		242.cel
7	20		155R.cel
8	3	S529	106.cel
9	13	S529	1437.cel
10	9	S529	1317.cel
11	5	S529	12.cel
12	11	S529	1399.cel
13	16	S529	148.cel
14	17	S529	1497R.cel
15	14	S529	1453.cel
16	26	S529	1854R.cel
17	60	S529	566.cel
18	50	S529	428.cel
19	70	S529	94bis.cel
20	22	S529	159.cel
21	39	S529	30.cel
22	15	S529	147.cel
23	40	S529	300.cel
24	48	S529	390.cel
25	51	S529	444.cel
26	61	S529	57.cel
27	69	S529	93.cel
28	7	S529	129.cel
29	8	S529	1308.cel
30	4	S529	1076.cel
31	18	S529	15.cel
32	44	S529	345.cel
33	19	S529	1553.cel
34	55	S529	527.cel
35	37	S529	284.cel
36	42	S529	328.cel
37	34	S529	269.cel
38	59	S529	563.cel
39	71	S529	97.cel
40	66	S529	83.cel
41	35	S529	274.cel
42	43	S529	344.cel
43	36	S529	283.cel
44	6	S529	1284.cel
45	12	S529	1430.cel
46	27	S529	190.cel
47	45	S529	349.cel
48	52	S529	458.cel
49	62	S529	574.cel
50	29	S529	222.cel
51	23	S529	1621.cel
52	1	S529	100R.cel
53	32	S529	246.cel
54	24	S529	1622R.cel
55	73	S529	ge205.cel
56	57	S529	547.cel
57	53	S529	461.cel
58	46	S529	356bis.cel
59	49	S529	396.cel
60	54	S529	506.cel
61	68	S529	90.cel
62	58	S529	558.cel
63	65	S529	80.cel
64	10	S529	1360.cel
65	47	S529	360.cel
66	56	S529	528bis.cel
67	63	S529	65R.cel
68	64	S529	70.cel
69	41		323.cel
70	33		254.cel
71	67		84.cel
72	38		288.cel
73	72		ge197.cel

Genes Names

1	66	218854_at	SART2 Chr:6q22
2	21	203561_at	FCGR2A Chr:1q23
3	62	217388_s_at	KYNU Chr:2q22.3
4	11	201743_at	CD14 Chr:5q31.1
5	46	211429_s_at	--- ---
6	8	201422_at	IFI30 Chr:19p13.1
7	36	206584_at	LY96 Chr:8q13.3
8	32	204971_at	CSTA Chr:3q21
9	68	219607_s_at	MS4A4A Chr:11q12
10	12	202546_at	VAMP8 Chr:2p12-p11.2
11	73	223280_x_at	MS4A6A Chr:11q12.1
12	76	224356_x_at	MS4A6A Chr:11q12.1
13	14	202833_s_at	SERPINA1 Chr:14q32.1
14	26	204174_at	ALOX5AP Chr:13q12
15	88	230550_at	MS4A6A Chr:11q12.1
16	67	219386_s_at	SLAMF8 Chr:1q23.1
17	9	201487_at	CTSC Chr:11q14.1-q14.3
18	69	219666_at	MS4A6A Chr:11q12.1
19	27	204232_at	FCER1G Chr:1q23
20	43	210176_at	TLR1 Chr:4p14
21	59	214770_at	MSR1 Chr:8p22
22	4	1554899_s_at	FCER1G Chr:1q23
23	13	202803_s_at	ITGB2 Chr:21q22.3
24	6	1555728_a_at	MS4A4A Chr:11q12
25	17	202953_at	C1QB Chr:1p36.3-p34.1
26	65	218232_at	C1QA Chr:1p36.3-p34.1
27	56	213566_at	RNASE6 Chr:14q11.2
28	77	225353_s_at	C1QG Chr:1p36.11
29	52	212588_at	PTPRC Chr:1q31-q32
30	5	1555349_a_at	ITGB2 Chr:21q22.3
31	31	204959_at	MNDA Chr:1q22
32	23	204007_at	FCGR3A Chr:1q23
33	10	201721_s_at	LAPTM5 Chr:1p34
34	30	204787_at	Z39IG Chr:xq12-q13.3
35	24	204122_at	TYROBP Chr:19q13.1
36	15	202901_x_at	CTSS Chr:1q21
37	35	206111_at	RNASE2 Chr:14q24-q31
38	83	228532_at	MGC24133 Chr:1p13.2
39	57	214467_at	GPR65 Chr:14q31-q32.1
40	22	204006_s_at	FCGR3A Chr:1q23
41	1	1552316_a_at	IMAP1 Chr:7q36.1
42	37	208018_s_at	HCK Chr:20q11-q12
43	89	232617_at	CTSS Chr:1q21
44	18	202957_at	HCLS1 Chr:3q13
45	16	202902_s_at	CTSS Chr:1q21
46	28	204446_s_at	ALOX5 Chr:10q11.2
47	84	229560_at	TLR8 Chr:xp22
48	33	205786_s_at	ITGAM Chr:16p11.2
49	71	220330_s_at	SAMSN1 Chr:21q11
50	81	227266_s_at	FYB Chr:5p13.1
51	72	221698_s_at	CLECSF12 Chr:12p13.2-p12.3
52	20	203416_at	CD53 Chr:1p13
53	86	229937_x_at	LILRB1 Chr:19q13.4
54	61	216950_s_at	FCGR1A Chr:1q21.2-q21.3
55	44	210314_x_at	TNFSF13 Chr:17p13.1
56	3	1552807_a_at	SIGLEC10 Chr:19q13.3
57	79	226068_at	SYK Chr:9q22
58	78	225502_at	DOCK8 Chr:9p24.3
59	64	217983_s_at	RNASET2 Chr:6q27
60	19	203104_at	CSF1R Chr:5q33-q35
61	90	232843_s_at	DOCK8 Chr:9p24.3
62	58	214511_x_at	FCGR1A Chr:1q21.2-q21.3
63	82	227346_at	ZNFN1A1 Chr:7p13-p11.1
64	63	217478_s_at	HLA-DMA Chr:6p21.3
65	40	209312_x_at	HLA-DRB1 Chr:6p21.3
66	45	210982_s_at	HLA-DRA Chr:6p21.3
67	60	215193_x_at	HLA-DRB3 Chr:6p21.3
68	38	208306_x_at	HLA-DRB3 Chr:6p21.3
69	39	208894_at	HLA-DRA Chr:6p21.3
70	29	204670_x_at	HLA-DRB3 Chr:6p21.3
71	41	209619_at	CD74 Chr:5q32
72	54	212998_x_at	HLA-DQB1 Chr:6p21.3
73	47	211654_x_at	HLA-DQB1 Chr:6p21.3
74	51	211991_s_at	HLA-DPA1 Chr:6p21.3
75	74	223343_at	MS4A7 Chr:11q12
76	7	201137_s_at	HLA-DPB1 Chr:6p21.3
77	48	211656_x_at	HLA-DQB1 Chr:6p21.3
78	42	209823_x_at	HLA-DQB1 Chr:6p21.3
79	2	1552386_at	FLJ33641 Chr:5q12.1
80	55	213537_at	HLA-DPA1 Chr:6p21.3
81	53	212671_s_at	HLA-DQA1 Chr:6p21.3
82	80	227265_at	--- ---
83	50	211990_at	HLA-DPA1 Chr:6p21.3
84	87	230391_at	--- ---
85	70	220146_at	TLR7 Chr:xp22.3
86	34	205997_at	ADAM28 Chr:8p21.2
87	75	223620_at	GPR34 Chr:xp11.4-p11.3
88	49	211742_s_at	EVI2B Chr:17q11.2
89	85	229723_at	TAGAP Chr:6q25.3
90	25	204150_at	STAB1 Chr:3p21.31
91	91	38487_at	STAB1 Chr:3p21.31

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	18
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 03:23:52

S5_using_G8

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=18)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC