S5_using_G6

Super-paramagnetic Clustering of 73 points in a 84 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=3)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	25	S519	1780.cel
2	4	S519	1076.cel
3	16	S519	148.cel
4	36	S519	283.cel
5	19	S519	1553.cel
6	18		15.cel
7	41		323.cel
8	63		65R.cel
9	32		246.cel
10	38		288.cel
11	11		1399.cel
12	73		ge205.cel
13	10	S518 S524 S527	1360.cel
14	29	S518 S524 S527	222.cel
15	55	S518 S524 S527	527.cel
16	31	S518 S524 S527	242.cel
17	8	S518 S524 S527	1308.cel
18	27	S518 S524 S527	190.cel
19	65	S518 S524 S527	80.cel
20	56	S518 S524 S527	528bis.cel
21	13	S524 S527	1437.cel
22	44	S524 S527	345.cel
23	69	S524 S527	93.cel
24	33	S527	254.cel
25	58	S527	558.cel
26	70	S522 S525	94bis.cel
27	2	S522 S525	104.cel
28	15	S522 S525	147.cel
29	3	S522 S525	106.cel
30	30	S522 S525	236.cel
31	9	S522 S525	1317.cel
32	46	S522 S525	356bis.cel
33	45	S525	349.cel
34	7	S525	129.cel
35	37	S525	284.cel
36	12		1430.cel
37	6		1284.cel
38	34		269.cel
39	72		ge197.cel
40	66	S520 S526	83.cel
41	68	S520 S526	90.cel
42	57	S520 S526	547.cel
43	21	S520 S526	157.cel
44	43	S526	344.cel
45	22	S526	159.cel
46	52	S526	458.cel
47	61	S517 S523	57.cel
48	24	S517 S523	1622R.cel
49	54	S517 S523	506.cel
50	28	S517 S523	218.cel
51	14	S523	1453.cel
52	53	S523	461.cel
53	35	S521	274.cel
54	47	S521	360.cel
55	51	S521	444.cel
56	40	S521	300.cel
57	50		428.cel
58	17		1497R.cel
59	59		563.cel
60	23		1621.cel
61	48		390.cel
62	64		70.cel
63	1		100R.cel
64	26		1854R.cel
65	39		30.cel
66	5		12.cel
67	62		574.cel
68	49		396.cel
69	71		97.cel
70	67		84.cel
71	20		155R.cel
72	60		566.cel
73	42		328.cel

Genes Names

1	27	204825_at	MELK Chr:9p13.1
2	19	204162_at	KNTC2 Chr:18p11.31
3	4	202503_s_at	KIAA0101 Chr:15q22.1
4	40	209773_s_at	RRM2 Chr:2p25-p24
5	3	201890_at	RRM2 Chr:2p25-p24
6	49	218039_at	NUSAP1 Chr:15q14
7	66	222848_at	FKSG14 Chr:5p15.2-q12.3
8	52	218662_s_at	HCAP-G Chr:4p16-p15
9	14	203755_at	BUB1B Chr:15q15
10	46	214710_s_at	CCNB1 Chr:5q12
11	16	204026_s_at	ZWINT Chr:10q21-q22
12	9	203213_at	CDC2 Chr:10q21.1
13	22	204244_s_at	ASK Chr:7q21.3
14	36	208079_s_at	STK6 Chr:20q13.2-q13.3
15	2	201292_at	TOP2A Chr:17q21-q22
16	41	210052_s_at	TPX2 Chr:20q11.2
17	1	201291_s_at	TOP2A Chr:17q21-q22
18	7	202705_at	CCNB2 Chr:15q21.3
19	54	218755_at	KIF20A Chr:5q31
20	10	203358_s_at	EZH2 Chr:7q35-q36
21	15	203764_at	DLG7 Chr:14q22.2
22	57	219148_at	TOPK Chr:8p21.2
23	8	202870_s_at	CDC20 Chr:1p34.1
24	75	228273_at	FLJ11029 Chr:17q23.2
25	53	218663_at	HCAP-G Chr:4p16-p15
26	59	219787_s_at	ECT2 Chr:3q26.1-q26.2
27	77	228729_at	CCNB1 Chr:5q12
28	12	203554_x_at	PTTG1 Chr:5q35.1
29	18	204146_at	PIR51 Chr:12p13.2-p13.1
30	50	218355_at	KIF4A Chr:xq13.1
31	28	204962_s_at	CENPA Chr:2p24-p21
32	56	218883_s_at	KLIP1 Chr:4q35.1
33	48	218009_s_at	PRC1 Chr:15q26.1
34	42	210559_s_at	CDC2 Chr:10q21.1
35	35	207828_s_at	CENPF Chr:1q32-q41
36	39	209642_at	BUB1 Chr:2q14
37	65	222740_at	ATAD2 Chr:8q24.13
38	68	223381_at	CDCA1 Chr:1q23.2
39	58	219306_at	KNSL7 Chr:3p21.32
40	44	213226_at	PMSCL1 Chr:4q27
41	60	219918_s_at	ASPM Chr:1q31
42	80	230165_at	SGOL2 Chr:2q33.2
43	23	204444_at	KIF11 Chr:10q24.1
44	29	205046_at	CENPE Chr:4q24-q25
45	11	203362_s_at	MAD2L1 Chr:4q27
46	43	213007_at	FLJ10719 Chr:15q25-q26
47	82	236641_at	KIF14 Chr:1pter-q31.3
48	26	204822_at	TTK Chr:6q13-q21
49	38	209172_s_at	CENPF Chr:1q32-q41
50	76	228323_at	AF15Q14 Chr:15q14
51	71	226980_at	XTP1 Chr:5q12.1
52	63	222077_s_at	RACGAP1 Chr:12q13.12
53	51	218585_s_at	RAMP Chr:1q32.1-q32.2
54	64	222680_s_at	RAMP Chr:1q32.1-q32.2
55	25	204641_at	NEK2 Chr:1q32.2-q41
56	83	238756_at	LOC283431 Chr:12q23.3
57	69	224428_s_at	CDCA7 Chr:2q31
58	6	202589_at	TYMS Chr:18p11.32
59	67	223229_at	HSPC150 Chr:1q32.1
60	5	202580_x_at	FOXM1 Chr:12p13
61	20	204170_s_at	CKS2 Chr:9q22
62	55	218875_s_at	FBXO5 Chr:6q25-q26
63	62	222039_at	LOC146909 Chr:17q21.31
64	70	225834_at	MGC57827 ---
65	72	227249_at	NDE1 Chr:16p13.11
66	84	242560_at	FANCD2 Chr:3p26
67	32	206102_at	KIAA0186 Chr:20p11.21
68	17	204033_at	TRIP13 Chr:5p15.33
69	37	208808_s_at	HMGB2 Chr:4q31
70	74	228033_at	E2F7 Chr:12q21.1
71	34	207165_at	HMMR Chr:5q33.2-qter
72	79	229490_s_at	IQGAP3 Chr:1q23.1
73	81	235425_at	SGOL2 Chr:2q33.2
74	47	216237_s_at	MCM5 Chr:22q13.1
75	13	203560_at	GGH Chr:8q12.2
76	21	204240_s_at	SMC2L1 Chr:9q31.2
77	33	206632_s_at	APOBEC3B Chr:22q13.1-q13.2
78	61	220239_at	KLHL7 Chr:7p15.3
79	45	213906_at	MYBL1 Chr:8q22
80	24	204510_at	CDC7 Chr:1p22
81	73	227350_at	--- ---
82	31	205967_at	HIST1H4C Chr:6p21.3
83	30	205394_at	CHEK1 Chr:11q24-q24
84	78	229305_at	KLIP1 Chr:4q35.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	3
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 02:52:27

S5_using_G6

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=3)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC