S5_using_G5

Super-paramagnetic Clustering of 73 points in a 68 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=17)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	10		1360.cel
2	9	S513	1317.cel
3	22	S512 S513	159.cel
4	4	S511 S512 S513	1076.cel
5	19	S511 S512 S513	1553.cel
6	26	S511 S512 S513	1854R.cel
7	3	S511 S512 S513	106.cel
8	12	S511 S512 S513	1430.cel
9	18	S511 S512 S513	15.cel
10	5	S511 S512 S513	12.cel
11	11	S511 S512 S513	1399.cel
12	37	S511 S512 S513	284.cel
13	62	S511 S512 S513	574.cel
14	7	S511 S512 S513	129.cel
15	65	S511 S512 S513	80.cel
16	16	S511 S512 S513	148.cel
17	25	S511 S512 S513	1780.cel
18	23	S511 S512 S513	1621.cel
19	17	S511 S512 S513	1497R.cel
20	24	S511 S512 S513	1622R.cel
21	35	S511 S512 S513	274.cel
22	28	S511 S512 S513	218.cel
23	34	S511 S512 S513	269.cel
24	6	S511 S512 S513	1284.cel
25	39	S511 S512 S513	30.cel
26	68	S511 S512 S513	90.cel
27	31	S511 S512 S513	242.cel
28	41	S511 S512 S513	323.cel
29	33	S511 S512 S513	254.cel
30	43	S511 S512 S513	344.cel
31	21	S511 S512 S513	157.cel
32	45	S511 S512 S513	349.cel
33	46	S511 S512 S513	356bis.cel
34	47	S511 S512 S513	360.cel
35	8	S511 S512 S513	1308.cel
36	49	S511 S512 S513	396.cel
37	15	S511 S512 S513	147.cel
38	50	S511 S512 S513	428.cel
39	57	S511 S512 S513	547.cel
40	20	S511 S512 S513	155R.cel
41	54	S511 S512 S513	506.cel
42	60	S511 S512 S513	566.cel
43	67	S511 S512 S513	84.cel
44	66	S511 S512 S513	83.cel
45	70	S511 S512 S513	94bis.cel
46	61	S511 S512 S513	57.cel
47	72	S511 S512 S513	ge197.cel
48	29	S511 S512 S513	222.cel
49	59	S511 S512 S513	563.cel
50	71	S511 S512 S513	97.cel
51	52	S512 S513	458.cel
52	44	S512 S513	345.cel
53	32	S512 S513	246.cel
54	36	S512 S513	283.cel
55	64	S512 S513	70.cel
56	48	S513	390.cel
57	56	S513	528bis.cel
58	40	S513	300.cel
59	42	S513	328.cel
60	2		104.cel
61	14		1453.cel
62	27	S514 S516	190.cel
63	13	S514 S516	1437.cel
64	51	S514 S516	444.cel
65	53	S514 S516	461.cel
66	73	S514 S516	ge205.cel
67	1	S516	100R.cel
68	55	S516	527.cel
69	30	S515	236.cel
70	38	S515	288.cel
71	58	S515	558.cel
72	63	S515	65R.cel
73	69	S515	93.cel

Genes Names

1	10	205186_at	DNALI1 Chr:1p35.1
2	2	1554140_at	FLJ23129 Chr:1p31.3
3	39	230763_at	LOC128153 Chr:1q41
4	37	229816_at	FLJ23129 Chr:1p31.3
5	31	228100_at	LOC128344 Chr:1p13.2
6	26	223924_at	DKFZP434H0115 Chr:17q21.31
7	4	1554528_at	AAT1 Chr:3q12-q13.3
8	21	220302_at	MAK Chr:6q22
9	50	235946_at	FLJ32783 Chr:Xp11.23
10	30	227091_at	KIAA1505 Chr:7p12.3
11	41	231077_at	MGC20470 Chr:11p15.4
12	22	220390_at	FLJ23598 Chr:11p11.2
13	23	220591_s_at	FLJ22843 Chr:xp11.4
14	11	205406_s_at	SPA17 Chr:11q24.2
15	5	1557636_a_at	LOC136288 Chr:7p12.3
16	51	236222_at	AAT1 Chr:3q12-q13.3
17	46	231729_s_at	CAPS Chr:19p13.3
18	1	1553635_s_at	FLJ40873 Chr:1p31.3
19	15	208140_s_at	DKFZP586M1120 Chr:17p11.2
20	66	243087_at	NYD-SP29 Chr:1p22.3
21	12	205714_s_at	ZMYND10 Chr:3p21.3
22	48	233516_s_at	PF6 Chr:1p12
23	63	240857_at	DNAH9 Chr:17p12
24	54	236909_at	LOC129881 Chr:2q31.1
25	45	231549_at	MGC35194 Chr:1p36.21
26	53	236717_at	LOC165186 Chr:2p23.3
27	62	240065_at	FLJ25333 Chr:5q15
28	56	237281_at	AKAP28 Chr:xq25
29	42	231084_at	C10orf79 Chr:10q25.1
30	6	1558077_s_at	MDH1B Chr:2q34
31	34	229169_at	TTC18 Chr:10q22.3
32	67	243802_at	FLJ40427 Chr:3p21.2
33	19	220168_at	CASC1 Chr:12p12.1
34	61	239916_at	LOC146845 Chr:17p13.1
35	24	220636_at	DNAI2 Chr:17q25
36	64	241310_at	--- ---
37	55	237168_at	KIAA0266 Chr:13q12.2-q13.3
38	57	238116_at	DNCL2B Chr:16q23.3
39	60	239776_at	--- Chr:5q22.1
40	38	230093_at	TSGA2 Chr:21q22.3
41	20	220269_at	FLJ23049 Chr:3q26.2
42	13	206197_at	NME5 Chr:5q31
43	52	236325_at	--- ---
44	33	229012_at	C9orf24 Chr:9p13.2
45	27	224463_s_at	MGC13040 Chr:11q22.2
46	58	238327_at	ECGF1 Chr:22q13.33
47	65	241470_x_at	--- ---
48	49	235658_at	--- ---
49	8	202587_s_at	AK1 Chr:9q34.1
50	35	229170_s_at	TTC18 Chr:10q22.3
51	3	1554298_a_at	FLJ33620 Chr:3q26.2
52	17	218876_at	CGI-38 Chr:16q22.1
53	25	222890_at	HSPC065 Chr:16q13
54	18	219703_at	MNS1 Chr:15q21.2
55	28	226872_at	RFX2 Chr:19p13.3-p13.2
56	68	64900_at	CHST5 Chr:16q22.3
57	47	232984_at	HYDIN Chr:16q22.2
58	29	227081_at	DNALI1 Chr:1p35.1
59	43	231319_x_at	KIF9 Chr:3p21.31
60	16	210117_at	SPAG1 Chr:8q22.2
61	9	203397_s_at	GALNT3 Chr:2q24-q31
62	59	238584_at	FLJ22527 Chr:2q37.3
63	32	228450_at	LOC144100 Chr:11p15.2-p15.1
64	40	231068_at	FLJ31196 Chr:17p11.2
65	14	207624_s_at	RPGR Chr:xp11.4
66	36	229331_at	LOC132671 Chr:4q12
67	44	231380_at	VEST1 Chr:8q13
68	7	1558487_a_at	HNLF Chr:7p13

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	17
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 02:33:36

S5_using_G5

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=17)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC