S5_using_G4

Super-paramagnetic Clustering of 73 points in a 60 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=11)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	4	S510	1076.cel
2	16	S510	148.cel
3	19	S510	1553.cel
4	25	S510	1780.cel
5	50	S510	428.cel
6	65	S510	80.cel
7	18	S510	15.cel
8	69	S510	93.cel
9	13	S509	1437.cel
10	10	S509	1360.cel
11	11	S509	1399.cel
12	20	S509	155R.cel
13	33	S509	254.cel
14	38	S509	288.cel
15	64	S509	70.cel
16	1	S509	100R.cel
17	61	S509	57.cel
18	8	S509	1308.cel
19	27	S509	190.cel
20	7	S509	129.cel
21	34	S509	269.cel
22	36	S509	283.cel
23	44	S509	345.cel
24	45	S509	349.cel
25	47	S509	360.cel
26	14	S509	1453.cel
27	40	S509	300.cel
28	48	S509	390.cel
29	15	S509	147.cel
30	5	S509	12.cel
31	37	S509	284.cel
32	62	S509	574.cel
33	73	S509	ge205.cel
34	12	S509	1430.cel
35	23	S506 S507 S508 S509	1621.cel
36	31	S505 S506 S507 S508 S509	242.cel
37	70	S505 S506 S507 S508 S509	94bis.cel
38	17	S505 S506 S507 S508 S509	1497R.cel
39	24	S505 S506 S507 S508 S509	1622R.cel
40	28	S506 S507 S508 S509	218.cel
41	26	S506 S507 S508 S509	1854R.cel
42	46	S506 S507 S508 S509	356bis.cel
43	49	S507 S508 S509	396.cel
44	35	S507 S508 S509	274.cel
45	71	S507 S508 S509	97.cel
46	55	S507 S508 S509	527.cel
47	6	S507 S508 S509	1284.cel
48	60	S507 S508 S509	566.cel
49	32	S507 S508 S509	246.cel
50	54	S507 S508 S509	506.cel
51	29	S507 S508 S509	222.cel
52	21	S507 S508 S509	157.cel
53	22	S507 S508 S509	159.cel
54	39	S507 S508 S509	30.cel
55	41	S507 S508 S509	323.cel
56	9	S507 S508 S509	1317.cel
57	30	S507 S508 S509	236.cel
58	43	S507 S508 S509	344.cel
59	52	S507 S508 S509	458.cel
60	51	S507 S508 S509	444.cel
61	68	S507 S508 S509	90.cel
62	42	S507 S508 S509	328.cel
63	58	S507 S508 S509	558.cel
64	63	S507 S508 S509	65R.cel
65	67	S507 S508 S509	84.cel
66	3	S507 S508 S509	106.cel
67	72	S507 S508 S509	ge197.cel
68	2	S508 S509	104.cel
69	53	S508 S509	461.cel
70	59	S508 S509	563.cel
71	56	S508 S509	528bis.cel
72	57	S508 S509	547.cel
73	66	S509	83.cel

Genes Names

1	34	218469_at	GREM1 Chr:15q13-q15
2	27	211890_x_at	CAPN3 Chr:15q15.1-q21.1
3	25	210944_s_at	CAPN3 Chr:15q15.1-q21.1
4	30	214475_x_at	CAPN3 Chr:15q15.1-q21.1
5	26	211836_s_at	MOG Chr:6p22-p21.3
6	44	228624_at	FLJ11155 Chr:4q32.1
7	13	204733_at	KLK6 Chr:19q13.3
8	36	219750_at	FLJ11155 Chr:4q32.1
9	32	217613_at	FLJ11155 Chr:4q32.1
10	33	218094_s_at	C20orf35 Chr:20q13.12
11	17	205989_s_at	MOG Chr:6p22-p21.3
12	41	223699_at	CNDP1 Chr:18q22.3
13	6	1562608_at	--- ---
14	42	225822_at	MGC17299 Chr:1p34.1
15	9	204073_s_at	C11orf9 Chr:11q12-q13.1
16	37	220026_at	CLCA4 Chr:1p31-p22
17	19	207323_s_at	MBP Chr:18q23
18	10	204378_at	BCAS1 Chr:20q13.2-q13.3
19	21	209072_at	MBP Chr:18q23
20	2	1555807_a_at	MOG Chr:6p22-p21.3
21	29	213371_at	LDB3 Chr:10q22.3-q23.2
22	24	210657_s_at	PNUTL2 Chr:17q22-q23
23	23	210193_at	MOBP Chr:3p21.33
24	28	212829_at	--- ---
25	7	1565809_x_at	--- Chr:1p36.33
26	54	238498_at	--- ---
27	31	214650_x_at	MOG Chr:6p22-p21.3
28	14	204777_s_at	MAL Chr:2cen-q13
29	46	229781_at	--- ---
30	45	228891_at	LOC349236 Chr:9q22.2
31	60	242765_at	MOBP Chr:3p21.33
32	22	210169_at	KIAA0420 Chr:16p13.3
33	47	231911_at	KIAA1189 Chr:2q24.2
34	20	207659_s_at	MOBP Chr:3p21.33
35	57	241717_at	LOC285281 Chr:3p21.33
36	53	238008_at	MGC35308 Chr:6q27
37	40	223572_at	KIAA1173 Chr:3p21.33
38	48	232388_at	CNTNAP4 Chr:16q23.1
39	1	1553765_a_at	KIAA1900 Chr:6q16.3
40	51	235794_at	MOBP Chr:3p21.33
41	38	221868_at	KIAA1155 Chr:2p13.2
42	4	1557943_at	CNP Chr:17q21
43	3	1557481_a_at	--- ---
44	59	242002_at	TCBA1 Chr:6q21
45	11	204547_at	RAB40B Chr:17q25.3
46	39	222862_s_at	AK5 Chr:1p31
47	49	235342_at	SPOCK3 Chr:4q32.3
48	16	205814_at	GRM3 Chr:7q21.1-q21.2
49	52	236420_s_at	TMEM16D Chr:12q23.3
50	55	239575_at	TMEM10 Chr:10q23-q24
51	58	241833_at	--- ---
52	15	205637_s_at	SH3GL3 Chr:15q24
53	56	240053_x_at	--- ---
54	5	1562473_at	--- ---
55	8	202890_at	MAP7 Chr:6q23.2
56	12	204681_s_at	RAPGEF5 Chr:7p15.3
57	35	219429_at	FA2H Chr:16q23
58	43	227006_at	PPP1R14A Chr:19q13.1
59	50	235476_at	TSBF1 Chr:3q26.1
60	18	207308_at	SLCO1A2 Chr:12p12

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	11
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 02:17:21

S5_using_G4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=11)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC