S5_using_G3

Super-paramagnetic Clustering of 73 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=15)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	13	S503	1437.cel
2	4	S503	1076.cel
3	16	S503	148.cel
4	19	S503	1553.cel
5	25	S503	1780.cel
6	7	S502 S504	129.cel
7	18	S502 S504	15.cel
8	34	S502 S504	269.cel
9	1	S502 S504	100R.cel
10	8	S500 S502 S504	1308.cel
11	27	S500 S502 S504	190.cel
12	11	S500 S502 S504	1399.cel
13	44	S500 S502 S504	345.cel
14	61	S500 S502 S504	57.cel
15	36	S504	283.cel
16	5	S501 S504	12.cel
17	40	S499 S501 S504	300.cel
18	32	S497 S499 S501 S504	246.cel
19	2	S496 S497 S499 S501 S504	104.cel
20	10	S496 S497 S499 S501 S504	1360.cel
21	20	S496 S497 S499 S501 S504	155R.cel
22	28	S496 S497 S499 S501 S504	218.cel
23	24	S496 S497 S499 S501 S504	1622R.cel
24	6	S496 S497 S499 S501 S504	1284.cel
25	9	S496 S497 S499 S501 S504	1317.cel
26	12	S496 S497 S499 S501 S504	1430.cel
27	22	S496 S497 S499 S501 S504	159.cel
28	29	S496 S497 S499 S501 S504	222.cel
29	26	S496 S497 S499 S501 S504	1854R.cel
30	23	S496 S497 S499 S501 S504	1621.cel
31	50	S496 S497 S499 S501 S504	428.cel
32	39	S496 S497 S499 S501 S504	30.cel
33	30	S496 S497 S499 S501 S504	236.cel
34	46	S496 S497 S499 S501 S504	356bis.cel
35	71	S496 S497 S499 S501 S504	97.cel
36	49	S496 S497 S499 S501 S504	396.cel
37	51	S496 S497 S499 S501 S504	444.cel
38	63	S496 S497 S499 S501 S504	65R.cel
39	31	S496 S497 S499 S501 S504	242.cel
40	52	S496 S497 S499 S501 S504	458.cel
41	33	S496 S497 S499 S501 S504	254.cel
42	66	S496 S497 S499 S501 S504	83.cel
43	69	S496 S497 S499 S501 S504	93.cel
44	15	S496 S497 S499 S501 S504	147.cel
45	35	S496 S497 S499 S501 S504	274.cel
46	43	S496 S497 S499 S501 S504	344.cel
47	41	S496 S497 S499 S501 S504	323.cel
48	42	S496 S497 S499 S501 S504	328.cel
49	3	S496 S497 S499 S501 S504	106.cel
50	17	S496 S497 S499 S501 S504	1497R.cel
51	45	S496 S497 S499 S501 S504	349.cel
52	21	S496 S497 S499 S501 S504	157.cel
53	47	S496 S497 S499 S501 S504	360.cel
54	59	S496 S497 S499 S501 S504	563.cel
55	68	S496 S497 S499 S501 S504	90.cel
56	70	S496 S497 S499 S501 S504	94bis.cel
57	53	S496 S497 S499 S501 S504	461.cel
58	55	S496 S497 S499 S501 S504	527.cel
59	64	S496 S497 S499 S501 S504	70.cel
60	60	S496 S497 S499 S501 S504	566.cel
61	67	S496 S497 S499 S501 S504	84.cel
62	54	S497 S499 S501 S504	506.cel
63	65	S497 S499 S501 S504	80.cel
64	62	S499 S501 S504	574.cel
65	14	S499 S501 S504	1453.cel
66	38	S498 S499 S501 S504	288.cel
67	48	S498 S499 S501 S504	390.cel
68	37	S498 S499 S501 S504	284.cel
69	73	S498 S499 S501 S504	ge205.cel
70	58	S499 S501 S504	558.cel
71	72	S499 S501 S504	ge197.cel
72	57	S499 S501 S504	547.cel
73	56	S499 S501 S504	528bis.cel

Genes Names

1	11	203798_s_at	VSNL1 Chr:2p24.3
2	50	228262_at	FLJ14503 Chr:xp22.13
3	22	206376_at	SLC6A15 Chr:12q21.3
4	49	227702_at	CYP4X1 Chr:1p33
5	23	206456_at	GABRA5 Chr:15q11.2-q12
6	67	243929_at	--- ---
7	39	219937_at	TRHDE Chr:12q15-q21
8	34	214945_at	NY-REN-7 Chr:5q35.3
9	7	1556366_s_at	FLJ33708 Chr:6p24.3
10	36	219425_at	SULT4A1 Chr:22q13.2-q13.31
11	3	1553864_at	DKFZp761H2121 Chr:10q26.13
12	24	206678_at	GABRA1 Chr:5q34-q35
13	57	233002_at	KIAA1622 Chr:14q32.2
14	53	230137_at	FLJ30834 Chr:4q27
15	40	220030_at	STYK1 Chr:12p13.31
16	25	206780_at	GAD2 Chr:10p11.23
17	6	1556351_at	HCN1 Chr:5p12
18	4	1556095_at	UNC13C Chr:15q21.1
19	14	204081_at	NRGN Chr:11q24
20	30	213921_at	SST Chr:3q28
21	17	205113_at	NEF3 Chr:8p21
22	15	204229_at	SLC17A7 Chr:19q13
23	66	242404_at	--- ---
24	1	1552714_at	CREG2 Chr:2q12.1
25	55	231489_x_at	--- ---
26	21	205827_at	CCK Chr:3p22-p21.3
27	68	244118_at	GABRA1 Chr:5q34-q35
28	2	1553422_s_at	A2BP1 Chr:16p13.3
29	8	1557122_s_at	--- ---
30	45	224650_at	MAL2 Chr:8q23
31	13	203999_at	SYT1 Chr:12cen-q21
32	29	210247_at	SYN2 Chr:3p25
33	56	232426_at	--- ---
34	69	52837_at	KIAA1644 Chr:22q13
35	41	220359_s_at	ARPP-21 Chr:3p22.1
36	42	221217_s_at	A2BP1 Chr:16p13.3
37	12	203998_s_at	SYT1 Chr:12cen-q21
38	28	210227_at	DLGAP2 Chr:8p23
39	5	1556096_s_at	UNC13C Chr:15q21.1
40	54	230551_at	--- ---
41	59	237384_x_at	--- ---
42	58	236456_at	PTPN5 Chr:11p15.1
43	65	241807_x_at	--- ---
44	19	205635_at	HAPIP Chr:3q21.2
45	31	214044_at	RYR2 Chr:1q42.1-q43
46	9	1568612_at	GABRG2 Chr:5q31.1-q33.1
47	51	229039_at	SYN2 Chr:3p25
48	16	204546_at	KIAA0513 Chr:16q24.1
49	10	202507_s_at	SNAP25 Chr:20p12-p11.2
50	38	219671_at	HPCAL4 Chr:1p34.2
51	47	226086_at	SYT13 Chr:11p12-p11
52	18	205414_s_at	KIAA0672 Chr:17p12
53	37	219659_at	ATP8A2 Chr:13q12-13
54	27	210040_at	SLC12A5 Chr:20q13.12
55	63	241399_at	TAFA2 Chr:12q13.3-q14.1
56	46	225111_s_at	NAPB Chr:20p12.3-p11.21
57	62	239765_at	--- ---
58	48	227053_at	PACSIN1 Chr:6p21.3
59	35	214956_at	--- ---
60	60	239357_at	--- ---
61	32	214098_at	KIAA1107 Chr:1p22.1
62	33	214811_at	KIAA0318 Chr:12q24.33
63	44	224209_s_at	GDA Chr:9q21.11-21.33
64	20	205691_at	SYNGR3 Chr:16p13
65	26	209726_at	CA11 Chr:19q13.3
66	61	239579_at	ABHD7 Chr:1p22.1
67	43	224164_at	TPM3 Chr:1q21.2
68	52	229254_at	DKFZp761N1114 Chr:1q32.1
69	64	241672_at	LOC400120 Chr:13q13.2

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	15
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 01:59:28

S5_using_G3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=15)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC