S5_using_G29

Super-paramagnetic Clustering of 73 points in a 101 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=3)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	18	S691	15.cel
2	25	S691	1780.cel
3	16	S691	148.cel
4	36	S691	283.cel
5	4	S691	1076.cel
6	19	S691	1553.cel
7	32	S690	246.cel
8	38	S690	288.cel
9	41	S690	323.cel
10	63	S690	65R.cel
11	15	S689 S694	147.cel
12	3	S689 S694	106.cel
13	37	S689 S694	284.cel
14	46	S689 S694	356bis.cel
15	70	S694	94bis.cel
16	45	S694	349.cel
17	28	S688	218.cel
18	67	S688	84.cel
19	60	S688	566.cel
20	20	S688	155R.cel
21	53	S687 S693 S695 S698	461.cel
22	10	S687 S693 S695 S698	1360.cel
23	31	S687 S693 S695 S698	242.cel
24	55	S687 S693 S695 S698	527.cel
25	29	S687 S693 S695 S698	222.cel
26	8	S687 S693 S695 S698	1308.cel
27	27	S687 S693 S695 S698	190.cel
28	65	S687 S693 S695 S698	80.cel
29	33	S693 S695 S698	254.cel
30	58	S693 S695 S698	558.cel
31	69	S695 S698	93.cel
32	44	S698	345.cel
33	56	S698	528bis.cel
34	13	S698	1437.cel
35	59		563.cel
36	23		1621.cel
37	12		1430.cel
38	22		159.cel
39	48		390.cel
40	1		100R.cel
41	64		70.cel
42	43	S686	344.cel
43	57	S686	547.cel
44	17	S686	1497R.cel
45	11	S686	1399.cel
46	62		574.cel
47	5		12.cel
48	39		30.cel
49	6		1284.cel
50	34		269.cel
51	73		ge205.cel
52	24	S696 S697	1622R.cel
53	14	S696 S697	1453.cel
54	54	S696 S697	506.cel
55	50	S696 S697	428.cel
56	42	S696 S697	328.cel
57	72	S692 S697	ge197.cel
58	35	S692 S697	274.cel
59	47	S692 S697	360.cel
60	61	S692 S697	57.cel
61	40		300.cel
62	71		97.cel
63	26		1854R.cel
64	49		396.cel
65	51		444.cel
66	52		458.cel
67	66		83.cel
68	21		157.cel
69	68		90.cel
70	30		236.cel
71	2		104.cel
72	7		129.cel
73	9		1317.cel

Genes Names

1	31	204825_at	MELK Chr:9p13.1
2	23	204162_at	KNTC2 Chr:18p11.31
3	7	202503_s_at	KIAA0101 Chr:15q22.1
4	45	209773_s_at	RRM2 Chr:2p25-p24
5	4	201890_at	RRM2 Chr:2p25-p24
6	56	218039_at	NUSAP1 Chr:15q14
7	77	222848_at	FKSG14 Chr:5p15.2-q12.3
8	60	218662_s_at	HCAP-G Chr:4p16-p15
9	17	203755_at	BUB1B Chr:15q15
10	53	214710_s_at	CCNB1 Chr:5q12
11	20	204026_s_at	ZWINT Chr:10q21-q22
12	12	203213_at	CDC2 Chr:10q21.1
13	26	204244_s_at	ASK Chr:7q21.3
14	41	208079_s_at	STK6 Chr:20q13.2-q13.3
15	3	201292_at	TOP2A Chr:17q21-q22
16	46	210052_s_at	TPX2 Chr:20q11.2
17	2	201291_s_at	TOP2A Chr:17q21-q22
18	10	202705_at	CCNB2 Chr:15q21.3
19	62	218755_at	KIF20A Chr:5q31
20	13	203358_s_at	EZH2 Chr:7q35-q36
21	18	203764_at	DLG7 Chr:14q22.2
22	65	219148_at	TOPK Chr:8p21.2
23	11	202870_s_at	CDC20 Chr:1p34.1
24	90	228273_at	FLJ11029 Chr:17q23.2
25	61	218663_at	HCAP-G Chr:4p16-p15
26	68	219787_s_at	ECT2 Chr:3q26.1-q26.2
27	92	228729_at	CCNB1 Chr:5q12
28	15	203554_x_at	PTTG1 Chr:5q35.1
29	22	204146_at	PIR51 Chr:12p13.2-p13.1
30	57	218355_at	KIF4A Chr:xq13.1
31	32	204962_s_at	CENPA Chr:2p24-p21
32	64	218883_s_at	KLIP1 Chr:4q35.1
33	55	218009_s_at	PRC1 Chr:15q26.1
34	47	210559_s_at	CDC2 Chr:10q21.1
35	40	207828_s_at	CENPF Chr:1q32-q41
36	44	209642_at	BUB1 Chr:2q14
37	75	222740_at	ATAD2 Chr:8q24.13
38	79	223381_at	CDCA1 Chr:1q23.2
39	66	219306_at	KNSL7 Chr:3p21.32
40	50	213226_at	PMSCL1 Chr:4q27
41	69	219918_s_at	ASPM Chr:1q31
42	96	230165_at	SGOL2 Chr:2q33.2
43	27	204444_at	KIF11 Chr:10q24.1
44	34	205046_at	CENPE Chr:4q24-q25
45	14	203362_s_at	MAD2L1 Chr:4q27
46	49	213007_at	FLJ10719 Chr:15q25-q26
47	99	236641_at	KIF14 Chr:1pter-q31.3
48	30	204822_at	TTK Chr:6q13-q21
49	43	209172_s_at	CENPF Chr:1q32-q41
50	91	228323_at	AF15Q14 Chr:15q14
51	86	226980_at	XTP1 Chr:5q12.1
52	73	222077_s_at	RACGAP1 Chr:12q13.12
53	59	218585_s_at	RAMP Chr:1q32.1-q32.2
54	74	222680_s_at	RAMP Chr:1q32.1-q32.2
55	29	204641_at	NEK2 Chr:1q32.2-q41
56	100	238756_at	LOC283431 Chr:12q23.3
57	81	224428_s_at	CDCA7 Chr:2q31
58	9	202589_at	TYMS Chr:18p11.32
59	78	223229_at	HSPC150 Chr:1q32.1
60	8	202580_x_at	FOXM1 Chr:12p13
61	24	204170_s_at	CKS2 Chr:9q22
62	63	218875_s_at	FBXO5 Chr:6q25-q26
63	72	222039_at	LOC146909 Chr:17q21.31
64	84	225834_at	MGC57827 ---
65	87	227249_at	NDE1 Chr:16p13.11
66	101	242560_at	FANCD2 Chr:3p26
67	37	206102_at	KIAA0186 Chr:20p11.21
68	21	204033_at	TRIP13 Chr:5p15.33
69	42	208808_s_at	HMGB2 Chr:4q31
70	89	228033_at	E2F7 Chr:12q21.1
71	39	207165_at	HMMR Chr:5q33.2-qter
72	94	229490_s_at	IQGAP3 Chr:1q23.1
73	98	235425_at	SGOL2 Chr:2q33.2
74	54	216237_s_at	MCM5 Chr:22q13.1
75	16	203560_at	GGH Chr:8q12.2
76	25	204240_s_at	SMC2L1 Chr:9q31.2
77	38	206632_s_at	APOBEC3B Chr:22q13.1-q13.2
78	70	220239_at	KLHL7 Chr:7p15.3
79	51	213906_at	MYBL1 Chr:8q22
80	28	204510_at	CDC7 Chr:1p22
81	88	227350_at	--- ---
82	36	205967_at	HIST1H4C Chr:6p21.3
83	35	205394_at	CHEK1 Chr:11q24-q24
84	93	229305_at	KLIP1 Chr:4q35.1
85	5	202107_s_at	MCM2 Chr:3q21
86	19	204023_at	RFC4 Chr:3q27
87	76	222843_at	FIGNL1 Chr:7p12.2
88	33	205034_at	CCNE2 Chr:8q22.1
89	95	229551_x_at	ZNF367 Chr:9q22
90	97	232315_at	LOC400713 Chr:19q13.41
91	85	226319_s_at	THOC4 Chr:17q25.3
92	58	218542_at	C10orf3 Chr:10q23.33
93	67	219493_at	SHCBP1 Chr:16q11.2
94	71	221521_s_at	Pfs2 Chr:16q24.1
95	6	202421_at	IGSF3 Chr:1p13
96	52	214235_at	CYP3A5 Chr:7q21.1
97	82	225081_s_at	RAM2 Chr:7p15.3
98	83	225655_at	UHRF1 Chr:19p13.3
99	80	223748_at	SLC4A11 Chr:20p12
100	1	201014_s_at	PAICS Chr:4pter-q21
101	48	210983_s_at	MCM7 Chr:7q21.3-q22.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	3
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 10:26:31

S5_using_G29

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=3)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC