S5_using_G27

Super-paramagnetic Clustering of 73 points in a 79 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	9	S667 S671	1317.cel
2	23	S667 S671	1621.cel
3	16	S666 S667 S671	148.cel
4	4	S666 S667 S671	1076.cel
5	19	S666 S667 S671	1553.cel
6	25	S666 S667 S671	1780.cel
7	3	S666 S667 S671	106.cel
8	8	S666 S667 S671	1308.cel
9	7	S666 S667 S671	129.cel
10	11	S666 S667 S671	1399.cel
11	37	S666 S667 S671	284.cel
12	62	S666 S667 S671	574.cel
13	18	S666 S667 S671	15.cel
14	65	S666 S667 S671	80.cel
15	72	S666 S667 S671	ge197.cel
16	32	S666 S667 S671	246.cel
17	24	S666 S667 S671	1622R.cel
18	33	S666 S667 S671	254.cel
19	54	S666 S667 S671	506.cel
20	45	S666 S667 S671	349.cel
21	41	S666 S667 S671	323.cel
22	17	S666 S667 S671	1497R.cel
23	31	S666 S667 S671	242.cel
24	28	S666 S667 S671	218.cel
25	6	S666 S667 S671	1284.cel
26	35	S666 S667 S671	274.cel
27	43	S666 S667 S671	344.cel
28	39	S666 S667 S671	30.cel
29	5	S666 S667 S671	12.cel
30	15	S666 S667 S671	147.cel
31	46	S666 S667 S671	356bis.cel
32	68	S666 S667 S671	90.cel
33	12	S666 S667 S671	1430.cel
34	49	S666 S667 S671	396.cel
35	50	S666 S667 S671	428.cel
36	21	S666 S667 S671	157.cel
37	52	S666 S667 S671	458.cel
38	59	S666 S667 S671	563.cel
39	61	S666 S667 S671	57.cel
40	29	S666 S667 S671	222.cel
41	70	S666 S667 S671	94bis.cel
42	71	S666 S667 S671	97.cel
43	64	S666 S667 S671	70.cel
44	66	S666 S667 S671	83.cel
45	34	S666 S667 S671	269.cel
46	67	S666 S667 S671	84.cel
47	60	S666 S667 S671	566.cel
48	20	S666 S667 S671	155R.cel
49	47	S666 S667 S671	360.cel
50	22	S667 S671	159.cel
51	44	S667 S671	345.cel
52	48	S667 S671	390.cel
53	42	S671	328.cel
54	56		528bis.cel
55	26		1854R.cel
56	57		547.cel
57	36		283.cel
58	40		300.cel
59	10		1360.cel
60	2		104.cel
61	14	S670	1453.cel
62	13	S669 S670	1437.cel
63	51	S669 S670	444.cel
64	73	S669 S670	ge205.cel
65	1	S669 S670	100R.cel
66	27	S669 S670	190.cel
67	55	S669 S670	527.cel
68	53	S669 S670	461.cel
69	30	S668 S670	236.cel
70	38	S668 S670	288.cel
71	58	S668 S670	558.cel
72	63	S668 S670	65R.cel
73	69	S668 S670	93.cel

Genes Names

1	12	205186_at	DNALI1 Chr:1p35.1
2	2	1554140_at	FLJ23129 Chr:1p31.3
3	48	230763_at	LOC128153 Chr:1q41
4	46	229816_at	FLJ23129 Chr:1p31.3
5	40	228100_at	LOC128344 Chr:1p13.2
6	32	223924_at	DKFZP434H0115 Chr:17q21.31
7	4	1554528_at	AAT1 Chr:3q12-q13.3
8	26	220302_at	MAK Chr:6q22
9	59	235946_at	FLJ32783 Chr:Xp11.23
10	38	227091_at	KIAA1505 Chr:7p12.3
11	50	231077_at	MGC20470 Chr:11p15.4
12	27	220390_at	FLJ23598 Chr:11p11.2
13	28	220591_s_at	FLJ22843 Chr:xp11.4
14	13	205406_s_at	SPA17 Chr:11q24.2
15	5	1557636_a_at	LOC136288 Chr:7p12.3
16	60	236222_at	AAT1 Chr:3q12-q13.3
17	55	231729_s_at	CAPS Chr:19p13.3
18	1	1553635_s_at	FLJ40873 Chr:1p31.3
19	18	208140_s_at	DKFZP586M1120 Chr:17p11.2
20	76	243087_at	NYD-SP29 Chr:1p22.3
21	14	205714_s_at	ZMYND10 Chr:3p21.3
22	57	233516_s_at	PF6 Chr:1p12
23	73	240857_at	DNAH9 Chr:17p12
24	63	236909_at	LOC129881 Chr:2q31.1
25	54	231549_at	MGC35194 Chr:1p36.21
26	62	236717_at	LOC165186 Chr:2p23.3
27	72	240065_at	FLJ25333 Chr:5q15
28	66	237281_at	AKAP28 Chr:xq25
29	51	231084_at	C10orf79 Chr:10q25.1
30	6	1558077_s_at	MDH1B Chr:2q34
31	43	229169_at	TTC18 Chr:10q22.3
32	78	243802_at	FLJ40427 Chr:3p21.2
33	24	220168_at	CASC1 Chr:12p12.1
34	71	239916_at	LOC146845 Chr:17p13.1
35	29	220636_at	DNAI2 Chr:17q25
36	74	241310_at	--- ---
37	65	237168_at	KIAA0266 Chr:13q12.2-q13.3
38	67	238116_at	DNCL2B Chr:16q23.3
39	70	239776_at	--- Chr:5q22.1
40	47	230093_at	TSGA2 Chr:21q22.3
41	25	220269_at	FLJ23049 Chr:3q26.2
42	15	206197_at	NME5 Chr:5q31
43	61	236325_at	--- ---
44	42	229012_at	C9orf24 Chr:9p13.2
45	33	224463_s_at	MGC13040 Chr:11q22.2
46	68	238327_at	ECGF1 Chr:22q13.33
47	75	241470_x_at	--- ---
48	58	235658_at	--- ---
49	9	202587_s_at	AK1 Chr:9q34.1
50	44	229170_s_at	TTC18 Chr:10q22.3
51	3	1554298_a_at	FLJ33620 Chr:3q26.2
52	20	218876_at	CGI-38 Chr:16q22.1
53	30	222890_at	HSPC065 Chr:16q13
54	22	219703_at	MNS1 Chr:15q21.2
55	36	226872_at	RFX2 Chr:19p13.3-p13.2
56	79	64900_at	CHST5 Chr:16q22.3
57	56	232984_at	HYDIN Chr:16q22.2
58	37	227081_at	DNALI1 Chr:1p35.1
59	52	231319_x_at	KIF9 Chr:3p21.31
60	19	210117_at	SPAG1 Chr:8q22.2
61	10	203397_s_at	GALNT3 Chr:2q24-q31
62	69	238584_at	FLJ22527 Chr:2q37.3
63	41	228450_at	LOC144100 Chr:11p15.2-p15.1
64	49	231068_at	FLJ31196 Chr:17p11.2
65	16	207624_s_at	RPGR Chr:xp11.4
66	45	229331_at	LOC132671 Chr:4q12
67	53	231380_at	VEST1 Chr:8q13
68	7	1558487_a_at	HNLF Chr:7p13
69	23	219833_s_at	EFHC1 Chr:6p12.3
70	34	225656_at	EFHC1 Chr:6p12.3
71	39	227105_at	FLJ22490 Chr:8q13.1
72	64	236915_at	--- ---
73	21	219229_at	SLCO3A1 Chr:15q26
74	31	223642_at	ZIC2 Chr:13q32
75	8	1562921_at	--- Chr:22q13.2
76	17	207797_s_at	DKFZp761O0113 Chr:4q35.1
77	77	243198_at	LOC161577 Chr:15q21.2
78	11	204187_at	GMPR Chr:6p23
79	35	226558_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	12
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 09:42:44

S5_using_G27

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC