S5_using_G26

Super-paramagnetic Clustering of 73 points in a 91 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=3)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	18	S658	15.cel
2	25	S658	1780.cel
3	16	S658	148.cel
4	4	S658	1076.cel
5	19	S658	1553.cel
6	36	S658	283.cel
7	21	S657	157.cel
8	52	S657	458.cel
9	66	S657	83.cel
10	68	S657	90.cel
11	43		344.cel
12	57		547.cel
13	17		1497R.cel
14	11		1399.cel
15	73		ge205.cel
16	70	S665	94bis.cel
17	2	S665	104.cel
18	7	S665	129.cel
19	3	S665	106.cel
20	37	S665	284.cel
21	46	S665	356bis.cel
22	9	S665	1317.cel
23	15	S665	147.cel
24	30	S665	236.cel
25	45	S665	349.cel
26	12	S665	1430.cel
27	22	S665	159.cel
28	62	S656	574.cel
29	39	S656	30.cel
30	5	S656	12.cel
31	26	S656	1854R.cel
32	6		1284.cel
33	34		269.cel
34	32	S655	246.cel
35	38	S655	288.cel
36	41	S655	323.cel
37	63	S655	65R.cel
38	48		390.cel
39	1		100R.cel
40	64		70.cel
41	72	S659 S663	ge197.cel
42	49	S659 S663	396.cel
43	35	S659 S663	274.cel
44	24	S659 S663	1622R.cel
45	28	S659 S663	218.cel
46	61	S659 S663	57.cel
47	47	S659 S663	360.cel
48	14	S659 S663	1453.cel
49	50	S659 S663	428.cel
50	54	S659 S663	506.cel
51	71	S663	97.cel
52	40	S663	300.cel
53	33		254.cel
54	58		558.cel
55	53	S660 S661 S662 S664	461.cel
56	55	S660 S661 S662 S664	527.cel
57	29	S660 S661 S662 S664	222.cel
58	65	S660 S661 S662 S664	80.cel
59	10	S660 S661 S662 S664	1360.cel
60	8	S660 S661 S662 S664	1308.cel
61	27	S660 S661 S662 S664	190.cel
62	69	S661 S662 S664	93.cel
63	59	S662 S664	563.cel
64	23	S662 S664	1621.cel
65	31	S662 S664	242.cel
66	13	S662 S664	1437.cel
67	44	S664	345.cel
68	56	S664	528bis.cel
69	67		84.cel
70	60		566.cel
71	42		328.cel
72	20		155R.cel
73	51		444.cel

Genes Names

1	29	204825_at	MELK Chr:9p13.1
2	21	204162_at	KNTC2 Chr:18p11.31
3	5	202503_s_at	KIAA0101 Chr:15q22.1
4	43	209773_s_at	RRM2 Chr:2p25-p24
5	3	201890_at	RRM2 Chr:2p25-p24
6	52	218039_at	NUSAP1 Chr:15q14
7	70	222848_at	FKSG14 Chr:5p15.2-q12.3
8	55	218662_s_at	HCAP-G Chr:4p16-p15
9	15	203755_at	BUB1B Chr:15q15
10	49	214710_s_at	CCNB1 Chr:5q12
11	18	204026_s_at	ZWINT Chr:10q21-q22
12	10	203213_at	CDC2 Chr:10q21.1
13	24	204244_s_at	ASK Chr:7q21.3
14	39	208079_s_at	STK6 Chr:20q13.2-q13.3
15	2	201292_at	TOP2A Chr:17q21-q22
16	44	210052_s_at	TPX2 Chr:20q11.2
17	1	201291_s_at	TOP2A Chr:17q21-q22
18	8	202705_at	CCNB2 Chr:15q21.3
19	57	218755_at	KIF20A Chr:5q31
20	11	203358_s_at	EZH2 Chr:7q35-q36
21	16	203764_at	DLG7 Chr:14q22.2
22	60	219148_at	TOPK Chr:8p21.2
23	9	202870_s_at	CDC20 Chr:1p34.1
24	80	228273_at	FLJ11029 Chr:17q23.2
25	56	218663_at	HCAP-G Chr:4p16-p15
26	62	219787_s_at	ECT2 Chr:3q26.1-q26.2
27	82	228729_at	CCNB1 Chr:5q12
28	13	203554_x_at	PTTG1 Chr:5q35.1
29	20	204146_at	PIR51 Chr:12p13.2-p13.1
30	53	218355_at	KIF4A Chr:xq13.1
31	30	204962_s_at	CENPA Chr:2p24-p21
32	59	218883_s_at	KLIP1 Chr:4q35.1
33	51	218009_s_at	PRC1 Chr:15q26.1
34	45	210559_s_at	CDC2 Chr:10q21.1
35	38	207828_s_at	CENPF Chr:1q32-q41
36	42	209642_at	BUB1 Chr:2q14
37	68	222740_at	ATAD2 Chr:8q24.13
38	72	223381_at	CDCA1 Chr:1q23.2
39	61	219306_at	KNSL7 Chr:3p21.32
40	47	213226_at	PMSCL1 Chr:4q27
41	63	219918_s_at	ASPM Chr:1q31
42	86	230165_at	SGOL2 Chr:2q33.2
43	25	204444_at	KIF11 Chr:10q24.1
44	32	205046_at	CENPE Chr:4q24-q25
45	12	203362_s_at	MAD2L1 Chr:4q27
46	46	213007_at	FLJ10719 Chr:15q25-q26
47	89	236641_at	KIF14 Chr:1pter-q31.3
48	28	204822_at	TTK Chr:6q13-q21
49	41	209172_s_at	CENPF Chr:1q32-q41
50	81	228323_at	AF15Q14 Chr:15q14
51	76	226980_at	XTP1 Chr:5q12.1
52	66	222077_s_at	RACGAP1 Chr:12q13.12
53	54	218585_s_at	RAMP Chr:1q32.1-q32.2
54	67	222680_s_at	RAMP Chr:1q32.1-q32.2
55	27	204641_at	NEK2 Chr:1q32.2-q41
56	90	238756_at	LOC283431 Chr:12q23.3
57	73	224428_s_at	CDCA7 Chr:2q31
58	7	202589_at	TYMS Chr:18p11.32
59	71	223229_at	HSPC150 Chr:1q32.1
60	6	202580_x_at	FOXM1 Chr:12p13
61	22	204170_s_at	CKS2 Chr:9q22
62	58	218875_s_at	FBXO5 Chr:6q25-q26
63	65	222039_at	LOC146909 Chr:17q21.31
64	74	225834_at	MGC57827 ---
65	77	227249_at	NDE1 Chr:16p13.11
66	91	242560_at	FANCD2 Chr:3p26
67	35	206102_at	KIAA0186 Chr:20p11.21
68	19	204033_at	TRIP13 Chr:5p15.33
69	40	208808_s_at	HMGB2 Chr:4q31
70	79	228033_at	E2F7 Chr:12q21.1
71	37	207165_at	HMMR Chr:5q33.2-qter
72	84	229490_s_at	IQGAP3 Chr:1q23.1
73	88	235425_at	SGOL2 Chr:2q33.2
74	50	216237_s_at	MCM5 Chr:22q13.1
75	14	203560_at	GGH Chr:8q12.2
76	23	204240_s_at	SMC2L1 Chr:9q31.2
77	36	206632_s_at	APOBEC3B Chr:22q13.1-q13.2
78	64	220239_at	KLHL7 Chr:7p15.3
79	48	213906_at	MYBL1 Chr:8q22
80	26	204510_at	CDC7 Chr:1p22
81	78	227350_at	--- ---
82	34	205967_at	HIST1H4C Chr:6p21.3
83	33	205394_at	CHEK1 Chr:11q24-q24
84	83	229305_at	KLIP1 Chr:4q35.1
85	4	202107_s_at	MCM2 Chr:3q21
86	17	204023_at	RFC4 Chr:3q27
87	69	222843_at	FIGNL1 Chr:7p12.2
88	31	205034_at	CCNE2 Chr:8q22.1
89	85	229551_x_at	ZNF367 Chr:9q22
90	87	232315_at	LOC400713 Chr:19q13.41
91	75	226319_s_at	THOC4 Chr:17q25.3

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	3
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 09:24:37

S5_using_G26

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=3)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC