S5_using_G25

Super-paramagnetic Clustering of 73 points in a 18 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=4)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	1		100R.cel
2	44		345.cel
3	64		70.cel
4	9		1317.cel
5	65	S647 S654	80.cel
6	48	S647 S654	390.cel
7	21	S647 S654	157.cel
8	45	S647 S654	349.cel
9	18	S647 S654	15.cel
10	37	S647 S654	284.cel
11	46	S640 S641 S648 S654	356bis.cel
12	13	S640 S641 S648 S654	1437.cel
13	73	S640 S641 S648 S654	ge205.cel
14	22	S640 S641 S648 S654	159.cel
15	28	S641 S648 S654	218.cel
16	39	S641 S648 S654	30.cel
17	15	S648 S654	147.cel
18	34	S648 S654	269.cel
19	8	S648 S654	1308.cel
20	23	S645 S654	1621.cel
21	24	S645 S654	1622R.cel
22	55	S645 S654	527.cel
23	51	S645 S654	444.cel
24	31	S645 S654	242.cel
25	49	S654	396.cel
26	71	S654	97.cel
27	58	S639 S652 S653	558.cel
28	7	S639 S652 S653	129.cel
29	43	S639 S652 S653	344.cel
30	62	S639 S652 S653	574.cel
31	69	S639 S652 S653	93.cel
32	32	S639 S652 S653	246.cel
33	5	S652 S653	12.cel
34	59	S652 S653	563.cel
35	10	S652 S653	1360.cel
36	47	S652 S653	360.cel
37	66	S652 S653	83.cel
38	3	S652 S653	106.cel
39	30	S646 S649 S652 S653	236.cel
40	56	S646 S649 S652 S653	528bis.cel
41	36	S646 S649 S652 S653	283.cel
42	53	S646 S649 S652 S653	461.cel
43	33	S649 S652 S653	254.cel
44	14	S652 S653	1453.cel
45	2	S650 S653	104.cel
46	19	S642 S650 S653	1553.cel
47	20	S642 S650 S653	155R.cel
48	11	S642 S650 S653	1399.cel
49	25	S642 S650 S653	1780.cel
50	4	S642 S650 S653	1076.cel
51	16	S642 S650 S653	148.cel
52	61	S650 S653	57.cel
53	72	S650 S653	ge197.cel
54	27		190.cel
55	52		458.cel
56	57		547.cel
57	60		566.cel
58	50		428.cel
59	26	S651	1854R.cel
60	42	S651	328.cel
61	12	S651	1430.cel
62	68	S644 S651	90.cel
63	6	S644 S651	1284.cel
64	29	S644 S651	222.cel
65	41	S644 S651	323.cel
66	67	S644 S651	84.cel
67	35	S643 S651	274.cel
68	38	S643 S651	288.cel
69	70	S643 S651	94bis.cel
70	17	S643 S651	1497R.cel
71	54	S643 S651	506.cel
72	63	S651	65R.cel
73	40	S651	300.cel

Genes Names

1	5	209692_at	EYA2 Chr:20q13.1
2	2	201984_s_at	EGFR Chr:7p12
3	4	203484_at	SEC61G Chr:7p11.2
4	8	228307_at	EMILIN3 Chr:20q11.2-q12
5	9	232120_at	--- ---
6	14	232925_at	--- ---
7	16	233025_at	PDZK3 Chr:5p13.3
8	18	243327_at	--- ---
9	1	201983_s_at	EGFR Chr:7p12
10	7	224999_at	--- ---
11	10	232224_at	MASP1 Chr:3q27-q28
12	6	210135_s_at	SHOX2 Chr:3q25-q26.1
13	12	232541_at	--- ---
14	17	233044_at	--- ---
15	15	232935_at	--- ---
16	13	232882_at	--- ---
17	3	203373_at	SOCS2 Chr:12q
18	11	232539_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	4
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 09:03:00

S5_using_G25

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=4)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC