S5_using_G22

Super-paramagnetic Clustering of 73 points in a 34 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Samples

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=11)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	4				1076.cel
2	13				1437.cel
3	16				148.cel
4	19				1553.cel
5	25				1780.cel
6	14	S627			1453.cel
7	20	S627			155R.cel
8	32	S627			246.cel
9	33	S627			254.cel
10	38	S627			288.cel
11	9	S628			1317.cel
12	36	S628			283.cel
13	26	S628			1854R.cel
14	15	S628			147.cel
15	27	S628			190.cel
16	1	S628			100R.cel
17	23	S628			1621.cel
18	6	S628			1284.cel
19	29	S628			222.cel
20	17	S628			1497R.cel
21	34	S628			269.cel
22	66	S628			83.cel
23	41	S628			323.cel
24	22	S628			159.cel
25	24	S628			1622R.cel
26	43	S628			344.cel
27	39	S628			30.cel
28	52	S628			458.cel
29	70	S628			94bis.cel
30	44	S628			345.cel
31	2	S628			104.cel
32	61	S628			57.cel
33	12	S628			1430.cel
34	42	S628			328.cel
35	28	S628			218.cel
36	46	S628			356bis.cel
37	21	S628			157.cel
38	45	S628			349.cel
39	50	S628			428.cel
40	51	S628			444.cel
41	62	S628			574.cel
42	37	S628			284.cel
43	57	S628			547.cel
44	31	S628			242.cel
45	49	S628			396.cel
46	68	S628			90.cel
47	11	S628			1399.cel
48	60	S628			566.cel
49	7	S628			129.cel
50	35	S628			274.cel
51	10	S628			1360.cel
52	40	S628			300.cel
53	30	S628			236.cel
54	48	S628			390.cel
55	71	S628			97.cel
56	55	S628			527.cel
57	65	S628			80.cel
58	69	S628			93.cel
59	73	S628			ge205.cel
60	18	S628			15.cel
61	8	S628			1308.cel
62	53	S628			461.cel
63	67	S628			84.cel
64	58	S628			558.cel
65	72	S628			ge197.cel
66	54	S628			506.cel
67	3	S628			106.cel
68	56	S628			528bis.cel
69	64	S628			70.cel
70	5	S628			12.cel
71	47	S628			360.cel
72	63	S628			65R.cel
73	59	S628			563.cel

Genes Names

1	9	205498_at		GHR Chr:5p13-p12
2	10	206953_s_at		LPHN2 Chr:1p31.1
3	2	201925_s_at		DAF Chr:1q32
4	21	226210_s_at		MEG3 Chr:14q32
5	22	226211_at		MEG3 Chr:14q32
6	3	202409_at		--- ---
7	4	202410_x_at		IGF2 Chr:11p15.5
8	6	203477_at		COL15A1 Chr:9q21-q22
9	11	207002_s_at		PLAGL1 Chr:6q24-q25
10	12	207943_x_at		PLAGL1 Chr:6q24-q25
11	13	209318_x_at		PLAGL1 Chr:6q24-q25
12	20	215513_at		HYMAI Chr:6q24
13	28	232355_at		--- ---
14	7	203924_at		GSTA1 Chr:6p12.1
15	8	204548_at		STAR Chr:8p11.2
16	5	202965_s_at		CAPN6 Chr:xq23
17	17	212713_at		MFAP4 Chr:17p11.2
18	14	209560_s_at		DLK1 Chr:14q32
19	15	210002_at		GATA6 Chr:18q11.1-q11.2
20	1	1559282_at		--- ---
21	24	227297_at		ITGA9 Chr:3p21.3
22	26	227911_at		FLJ10312 Chr:18p11.23
23	27	227947_at		C6orf56 Chr:6q24.1
24	31	236220_at		--- ---
25	33	239006_at		SLC26A7 Chr:8q23
26	19	213943_at		TWIST1 Chr:7p21.2
27	32	237945_at		--- ---
28	34	242856_at		--- ---
29	23	226905_at		MGC45871 Chr:17p13
30	25	227646_at		EBF Chr:5q34
31	29	233261_at		EBF Chr:5q34
32	16	210794_s_at		MEG3 Chr:14q32
33	18	212956_at		KIAA0882 Chr:4q31.1
34	30	234994_at		KIAA1913 Chr:6q23.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	11
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 08:01:14