S5_using_G20

Super-paramagnetic Clustering of 73 points in a 24 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	19		1553.cel
2	16		148.cel
3	37		284.cel
4	32	S615 S616	246.cel
5	33	S615 S616	254.cel
6	3	S614 S615 S616	106.cel
7	23	S614 S615 S616	1621.cel
8	73	S614 S615 S616	ge205.cel
9	20	S614 S615 S616	155R.cel
10	24	S614 S615 S616	1622R.cel
11	9	S614 S615 S616	1317.cel
12	17	S614 S615 S616	1497R.cel
13	26	S614 S615 S616	1854R.cel
14	66	S614 S615 S616	83.cel
15	68	S614 S615 S616	90.cel
16	70	S614 S615 S616	94bis.cel
17	30	S614 S615 S616	236.cel
18	72	S614 S615 S616	ge197.cel
19	60	S614 S615 S616	566.cel
20	67	S614 S615 S616	84.cel
21	14	S615 S616	1453.cel
22	64	S615 S616	70.cel
23	5	S615 S616	12.cel
24	13	S615 S616	1437.cel
25	6	S615 S616	1284.cel
26	7	S615 S616	129.cel
27	29	S615 S616	222.cel
28	49	S615 S616	396.cel
29	52	S615 S616	458.cel
30	2	S615 S616	104.cel
31	12	S615 S616	1430.cel
32	27	S612 S615 S616	190.cel
33	36	S612 S615 S616	283.cel
34	18	S612 S615 S616	15.cel
35	40	S612 S615 S616	300.cel
36	41	S615 S616	323.cel
37	34	S615 S616	269.cel
38	47	S615 S616	360.cel
39	1	S615 S616	100R.cel
40	44	S615 S616	345.cel
41	35	S615 S616	274.cel
42	56	S615 S616	528bis.cel
43	69	S615 S616	93.cel
44	22	S615 S616	159.cel
45	8	S615 S616	1308.cel
46	42	S615 S616	328.cel
47	39	S615 S616	30.cel
48	46	S615 S616	356bis.cel
49	11	S615 S616	1399.cel
50	61	S615 S616	57.cel
51	15	S613 S615 S616	147.cel
52	21	S613 S615 S616	157.cel
53	28	S613 S615 S616	218.cel
54	50	S613 S615 S616	428.cel
55	48	S613 S615 S616	390.cel
56	51	S613 S615 S616	444.cel
57	57	S613 S615 S616	547.cel
58	38	S615 S616	288.cel
59	63	S615 S616	65R.cel
60	43	S615 S616	344.cel
61	10	S615 S616	1360.cel
62	58	S615 S616	558.cel
63	53	S615 S616	461.cel
64	54	S615 S616	506.cel
65	59	S615 S616	563.cel
66	55	S615 S616	527.cel
67	65	S615 S616	80.cel
68	31	S616	242.cel
69	71	S616	97.cel
70	4		1076.cel
71	25		1780.cel
72	45		349.cel
73	62		574.cel

Genes Names

1	7	213684_s_at	LIM Chr:4q22
2	4	212249_at	PIK3R1 Chr:5q13.1
3	9	215342_s_at	HHL Chr:1q24
4	13	224828_at	CPEB4 Chr:5q21
5	6	212993_at	--- ---
6	14	224829_at	CPEB4 Chr:5q21
7	1	1559391_s_at	--- ---
8	2	204964_s_at	SSPN Chr:12p11.2
9	12	223185_s_at	BHLHB3 Chr:12p11.23-p12.1
10	8	213998_s_at	DDX17 Chr:22q13.1
11	11	223079_s_at	GLS Chr:2q32-q34
12	15	228471_at	LOC91526 Chr:2q33.1
13	5	212762_s_at	TCF7L2 Chr:10q25.3
14	10	222787_s_at	FLJ11273 Chr:7p21.3
15	16	231109_at	--- ---
16	21	243149_at	--- ---
17	17	235803_at	--- ---
18	3	209023_s_at	STAG2 Chr:xq25
19	24	244112_x_at	--- ---
20	18	236251_at	--- ---
21	22	243240_at	--- ---
22	23	244045_at	--- ---
23	19	241060_x_at	--- ---
24	20	242579_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 07:22:26

S5_using_G20

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC