S5_using_G2

Super-paramagnetic Clustering of 73 points in a 19 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Reordered Distance Matrix
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Samples
  • Genes
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=13)

     

    Reordered Distance Matrix

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Samples

    14 1076.cel
    219 1553.cel
    325 1780.cel
    445 349.cel
    518 15.cel
    665 80.cel
    762 574.cel
    816 148.cel
    937 284.cel
    1013 S4951437.cel
    112 S495104.cel
    1231 S495242.cel
    1327 S495190.cel
    149 S4951317.cel
    157 S495129.cel
    1635 S495274.cel
    1717 S4951497R.cel
    1821 S495157.cel
    1940 S495300.cel
    2046 S495356bis.cel
    2111 S4951399.cel
    2222 S495159.cel
    2334 S495269.cel
    2449 S495396.cel
    2566 S49583.cel
    2659 S495563.cel
    278 S4951308.cel
    2873 S495ge205.cel
    2926 S4951854R.cel
    3029 S495222.cel
    3115 S495147.cel
    3230 S495236.cel
    3361 S49557.cel
    3450 S495428.cel
    3568 S49590.cel
    3610 S4951360.cel
    3758 S495558.cel
    3828 S495218.cel
    3970 S49594bis.cel
    4024 S4951622R.cel
    4139 S49530.cel
    4271 S49597.cel
    4312 S4951430.cel
    4448 S495390.cel
    4557 S495547.cel
    4654 S495506.cel
    4736 S495283.cel
    4856 S495528bis.cel
    496 S4951284.cel
    5014 S4951453.cel
    511 S495100R.cel
    5223 S4951621.cel
    533 S495106.cel
    5460 S495566.cel
    5538 S495288.cel
    5664 S49570.cel
    5742 S495328.cel
    5843 S495344.cel
    5947 S495360.cel
    6051 S495444.cel
    6120 S495155R.cel
    6232 S495246.cel
    6367 S49584.cel
    6441 S495323.cel
    6572 S495ge197.cel
    6633 S495254.cel
    6763 S49565R.cel
    6853 S495461.cel
    6955 S495527.cel
    7052 S495458.cel
    715 S49512.cel
    7244 S495345.cel
    7369 S49593.cel

    Genes Names

    12201028_s_atCD99 Chr:xp22.32; yp11.3
    25201798_s_atFER1L3 Chr:10q24
    36203854_atIF Chr:4q25
    47204646_atDPYD Chr:1p22
    51200986_atSERPING1 Chr:11q12-q13.1
    612210427_x_atANXA2 Chr:15q21-q22
    74201590_x_atANXA2 Chr:15q21-q22
    814213503_x_atANXA2 Chr:15q21-q22
    911208816_x_atANXA2P1 Chr:4q21-q31
    103201426_s_atVIM Chr:10p13
    1110208747_s_atC1S Chr:12p13
    1213212067_s_atC1R Chr:12p13
    1317221773_atELK3 Chr:12q23
    148207808_s_atPROS1 Chr:3q11.2
    1515214853_s_atSHC1 Chr:1q21
    1616218983_atC1RL Chr:12p13.31
    179208659_atCLIC1 Chr:6p22.1-p21.2
    1818226621_atFGG Chr:4q28
    1919228141_at--- ---

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)13
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size1

    Created by SPC_HTML_REPORT on 13-Aug-2004 01:41:39