S5_using_G19

Super-paramagnetic Clustering of 73 points in a 80 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=16)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	4	S610 S611	1076.cel
2	16	S610 S611	148.cel
3	19	S610 S611	1553.cel
4	25	S610 S611	1780.cel
5	50	S611	428.cel
6	18	S611	15.cel
7	65	S611	80.cel
8	69	S611	93.cel
9	1	S608 S609	100R.cel
10	11	S608 S609	1399.cel
11	8	S608 S609	1308.cel
12	27	S608 S609	190.cel
13	13	S608 S609	1437.cel
14	20	S608 S609	155R.cel
15	33	S608 S609	254.cel
16	38	S608 S609	288.cel
17	64	S608 S609	70.cel
18	10	S608 S609	1360.cel
19	15	S608 S609	147.cel
20	12	S608 S609	1430.cel
21	5	S608 S609	12.cel
22	37	S608 S609	284.cel
23	48	S608 S609	390.cel
24	34	S608 S609	269.cel
25	36	S608 S609	283.cel
26	40	S608 S609	300.cel
27	14	S608 S609	1453.cel
28	44	S608 S609	345.cel
29	66	S608 S609	83.cel
30	45	S608 S609	349.cel
31	47	S608 S609	360.cel
32	62	S608 S609	574.cel
33	7	S608 S609	129.cel
34	61	S608 S609	57.cel
35	56	S609	528bis.cel
36	57	S609	547.cel
37	9	S606 S607 S609	1317.cel
38	3	S606 S607 S609	106.cel
39	26	S606 S607 S609	1854R.cel
40	29	S606 S607 S609	222.cel
41	23	S606 S607 S609	1621.cel
42	43	S606 S607 S609	344.cel
43	46	S606 S607 S609	356bis.cel
44	22	S606 S607 S609	159.cel
45	24	S606 S607 S609	1622R.cel
46	39	S606 S607 S609	30.cel
47	49	S606 S607 S609	396.cel
48	6	S606 S607 S609	1284.cel
49	71	S606 S607 S609	97.cel
50	42	S606 S607 S609	328.cel
51	28	S606 S607 S609	218.cel
52	30	S606 S607 S609	236.cel
53	35	S606 S607 S609	274.cel
54	41	S606 S607 S609	323.cel
55	60	S606 S607 S609	566.cel
56	67	S606 S607 S609	84.cel
57	72	S606 S607 S609	ge197.cel
58	31	S606 S607 S609	242.cel
59	52	S606 S607 S609	458.cel
60	2	S606 S607 S609	104.cel
61	53	S606 S607 S609	461.cel
62	51	S606 S607 S609	444.cel
63	54	S606 S607 S609	506.cel
64	55	S606 S607 S609	527.cel
65	21	S606 S607 S609	157.cel
66	17	S606 S607 S609	1497R.cel
67	32	S606 S607 S609	246.cel
68	58	S606 S607 S609	558.cel
69	63	S606 S607 S609	65R.cel
70	68	S606 S607 S609	90.cel
71	70	S606 S607 S609	94bis.cel
72	73	S606 S607 S609	ge205.cel
73	59	S607 S609	563.cel

Genes Names

1	38	218469_at	GREM1 Chr:15q13-q15
2	28	211890_x_at	CAPN3 Chr:15q15.1-q21.1
3	26	210944_s_at	CAPN3 Chr:15q15.1-q21.1
4	33	214475_x_at	CAPN3 Chr:15q15.1-q21.1
5	27	211836_s_at	MOG Chr:6p22-p21.3
6	56	228624_at	FLJ11155 Chr:4q32.1
7	14	204733_at	KLK6 Chr:19q13.3
8	42	219750_at	FLJ11155 Chr:4q32.1
9	36	217613_at	FLJ11155 Chr:4q32.1
10	37	218094_s_at	C20orf35 Chr:20q13.12
11	18	205989_s_at	MOG Chr:6p22-p21.3
12	47	223699_at	CNDP1 Chr:18q22.3
13	6	1562608_at	--- ---
14	50	225822_at	MGC17299 Chr:1p34.1
15	9	204073_s_at	C11orf9 Chr:11q12-q13.1
16	43	220026_at	CLCA4 Chr:1p31-p22
17	20	207323_s_at	MBP Chr:18q23
18	10	204378_at	BCAS1 Chr:20q13.2-q13.3
19	22	209072_at	MBP Chr:18q23
20	2	1555807_a_at	MOG Chr:6p22-p21.3
21	31	213371_at	LDB3 Chr:10q22.3-q23.2
22	25	210657_s_at	PNUTL2 Chr:17q22-q23
23	24	210193_at	MOBP Chr:3p21.33
24	30	212829_at	--- ---
25	7	1565809_x_at	--- Chr:1p36.33
26	70	238498_at	--- ---
27	34	214650_x_at	MOG Chr:6p22-p21.3
28	15	204777_s_at	MAL Chr:2cen-q13
29	58	229781_at	--- ---
30	57	228891_at	LOC349236 Chr:9q22.2
31	78	242765_at	MOBP Chr:3p21.33
32	23	210169_at	KIAA0420 Chr:16p13.3
33	60	231911_at	KIAA1189 Chr:2q24.2
34	21	207659_s_at	MOBP Chr:3p21.33
35	74	241717_at	LOC285281 Chr:3p21.33
36	69	238008_at	MGC35308 Chr:6q27
37	46	223572_at	KIAA1173 Chr:3p21.33
38	61	232388_at	CNTNAP4 Chr:16q23.1
39	1	1553765_a_at	KIAA1900 Chr:6q16.3
40	66	235794_at	MOBP Chr:3p21.33
41	44	221868_at	KIAA1155 Chr:2p13.2
42	4	1557943_at	CNP Chr:17q21
43	3	1557481_a_at	--- ---
44	77	242002_at	TCBA1 Chr:6q21
45	12	204547_at	RAB40B Chr:17q25.3
46	45	222862_s_at	AK5 Chr:1p31
47	64	235342_at	SPOCK3 Chr:4q32.3
48	17	205814_at	GRM3 Chr:7q21.1-q21.2
49	67	236420_s_at	TMEM16D Chr:12q23.3
50	71	239575_at	TMEM10 Chr:10q23-q24
51	75	241833_at	--- ---
52	16	205637_s_at	SH3GL3 Chr:15q24
53	72	240053_x_at	--- ---
54	5	1562473_at	--- ---
55	8	202890_at	MAP7 Chr:6q23.2
56	13	204681_s_at	RAPGEF5 Chr:7p15.3
57	41	219429_at	FA2H Chr:16q23
58	52	227006_at	PPP1R14A Chr:19q13.1
59	65	235476_at	TSBF1 Chr:3q26.1
60	19	207308_at	SLCO1A2 Chr:12p12
61	29	212750_at	PPP1R16B Chr:20q12
62	40	219305_x_at	FBXO2 Chr:1p36.21
63	80	41577_at	PPP1R16B Chr:20q12
64	79	244113_at	--- ---
65	35	214769_at	CLCN4 Chr:Xp22.3
66	39	218651_s_at	FLJ11196 Chr:15q22.32
67	48	224482_s_at	RAB11-FIP4 Chr:17q11.2
68	76	241873_at	UNC5C Chr:4q21-q23
69	51	226018_at	Ells1 Chr:7p15.1
70	54	227440_at	EB-1 Chr:12q23.1-q23.2
71	59	230104_s_at	p25 Chr:5p15.3
72	73	240292_x_at	EB-1 Chr:12q23.1-q23.2
73	53	227439_at	EB-1 Chr:12q23.1-q23.2
74	55	227441_s_at	EB-1 Chr:12q23.1-q23.2
75	62	234261_at	--- ---
76	68	236838_at	--- ---
77	11	204467_s_at	SNCA Chr:4q21
78	49	225727_at	PLEKHH1 Chr:14q24.1
79	63	235236_at	--- ---
80	32	213839_at	KIAA0500 Chr:14q32.2

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	16
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 07:03:23

S5_using_G19

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=16)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC