S5_using_G18

Super-paramagnetic Clustering of 73 points in a 25 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Samples

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	2				104.cel
2	10				1360.cel
3	20				155R.cel
4	18				15.cel
5	65				80.cel
6	9				1317.cel
7	4	S603			1076.cel
8	16	S603			148.cel
9	19	S603			1553.cel
10	33	S603			254.cel
11	42				328.cel
12	40				300.cel
13	8				1308.cel
14	63				65R.cel
15	13				1437.cel
16	27				190.cel
17	14				1453.cel
18	53				461.cel
19	30				236.cel
20	11	S600			1399.cel
21	60	S600			566.cel
22	29	S600			222.cel
23	6	S600			1284.cel
24	50	S600			428.cel
25	49	S600			396.cel
26	62	S600			574.cel
27	26	S600			1854R.cel
28	70	S600			94bis.cel
29	22	S600			159.cel
30	17	S600			1497R.cel
31	24	S600			1622R.cel
32	66	S600			83.cel
33	34	S600			269.cel
34	15	S600			147.cel
35	35	S600			274.cel
36	68	S600			90.cel
37	61	S600			57.cel
38	23	S600			1621.cel
39	71	S600			97.cel
40	28				218.cel
41	46				356bis.cel
42	39				30.cel
43	43				344.cel
44	52				458.cel
45	32				246.cel
46	58				558.cel
47	59				563.cel
48	38				288.cel
49	36				283.cel
50	54				506.cel
51	1	S602			100R.cel
52	44	S602			345.cel
53	55	S602			527.cel
54	48	S602			390.cel
55	69	S602			93.cel
56	21	S602			157.cel
57	51	S602			444.cel
58	31				242.cel
59	73				ge205.cel
60	45				349.cel
61	12	S604 S605			1430.cel
62	3	S599 S601 S604 S605			106.cel
63	7	S599 S601 S604 S605			129.cel
64	5	S599 S601 S604 S605			12.cel
65	57	S599 S601 S604 S605			547.cel
66	64	S599 S601 S604 S605			70.cel
67	41	S601 S604 S605			323.cel
68	25	S605			1780.cel
69	37	S605			284.cel
70	67	S605			84.cel
71	72	S605			ge197.cel
72	47				360.cel
73	56				528bis.cel

Genes Names

1	6	205741_s_at		DTNA Chr:18q12
2	8	207443_at		NR2E1 Chr:6q21
3	18	217678_at		SLC7A11 Chr:4q28-q32
4	11	209921_at		SLC7A11 Chr:4q28-q32
5	5	205363_at		BBOX1 Chr:11p14.2
6	3	204041_at		MAOB Chr:xp11.23
7	10	209301_at		CA2 Chr:8q22
8	12	210066_s_at		AQP4 Chr:18q11.2-q12.1
9	13	210067_at		AQP4 Chr:18q11.2-q12.1
10	2	203723_at		ITPKB Chr:1q42.13
11	4	204363_at		F3 Chr:1p22-p21
12	7	206022_at		NDP Chr:xp11.4
13	14	210068_s_at		AQP4 Chr:18q11.2-q12.1
14	15	210906_x_at		AQP4 Chr:18q11.2-q12.1
15	1	202800_at		SLC1A3 Chr:5p13
16	16	213395_at		MLC1 Chr:22q13.33
17	17	213618_at		CENTD1 Chr:4p15.1
18	9	207455_at		P2RY1 Chr:3q25.2
19	23	231925_at		--- ---
20	25	238003_at		FLJ25530 Chr:11q24.2
21	19	223605_at		SLC25A18 Chr:22q11.2
22	21	226228_at		AQP4 Chr:18q11.2-q12.1
23	20	226189_at		--- ---
24	22	227084_at		DTNA Chr:18q12
25	24	235795_at		PAX6 Chr:11p13

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 06:45:19