S5_using_G17

Super-paramagnetic Clustering of 73 points in a 141 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=17)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	13	S594	1437.cel
2	16	S593 S594	148.cel
3	4	S593 S594	1076.cel
4	19	S593 S594	1553.cel
5	25	S593 S594	1780.cel
6	18	S595 S597 S598	15.cel
7	8	S595 S597 S598	1308.cel
8	11	S595 S597 S598	1399.cel
9	27	S595 S597 S598	190.cel
10	34	S595 S597 S598	269.cel
11	7	S595 S597 S598	129.cel
12	44	S595 S597 S598	345.cel
13	1	S595 S597 S598	100R.cel
14	61	S595 S597 S598	57.cel
15	37	S597 S598	284.cel
16	5	S596 S598	12.cel
17	40	S596 S598	300.cel
18	12	S596 S598	1430.cel
19	56	S596 S598	528bis.cel
20	62	S596 S598	574.cel
21	26	S592 S596 S598	1854R.cel
22	32	S592 S596 S598	246.cel
23	2	S592 S596 S598	104.cel
24	10	S592 S596 S598	1360.cel
25	14	S592 S596 S598	1453.cel
26	6	S592 S596 S598	1284.cel
27	15	S592 S596 S598	147.cel
28	21	S592 S596 S598	157.cel
29	42	S592 S596 S598	328.cel
30	23	S592 S596 S598	1621.cel
31	24	S592 S596 S598	1622R.cel
32	28	S592 S596 S598	218.cel
33	22	S592 S596 S598	159.cel
34	29	S592 S596 S598	222.cel
35	9	S592 S596 S598	1317.cel
36	30	S592 S596 S598	236.cel
37	50	S592 S596 S598	428.cel
38	39	S592 S596 S598	30.cel
39	49	S592 S596 S598	396.cel
40	46	S592 S596 S598	356bis.cel
41	71	S592 S596 S598	97.cel
42	31	S592 S596 S598	242.cel
43	45	S592 S596 S598	349.cel
44	51	S592 S596 S598	444.cel
45	52	S592 S596 S598	458.cel
46	20	S592 S596 S598	155R.cel
47	33	S592 S596 S598	254.cel
48	55	S592 S596 S598	527.cel
49	53	S592 S596 S598	461.cel
50	60	S592 S596 S598	566.cel
51	63	S592 S596 S598	65R.cel
52	35	S592 S596 S598	274.cel
53	41	S592 S596 S598	323.cel
54	67	S592 S596 S598	84.cel
55	17	S592 S596 S598	1497R.cel
56	68	S592 S596 S598	90.cel
57	70	S592 S596 S598	94bis.cel
58	38	S592 S596 S598	288.cel
59	54	S592 S596 S598	506.cel
60	72	S592 S596 S598	ge197.cel
61	58	S592 S596 S598	558.cel
62	48	S592 S596 S598	390.cel
63	69	S592 S596 S598	93.cel
64	43	S592 S596 S598	344.cel
65	59	S592 S596 S598	563.cel
66	64	S592 S596 S598	70.cel
67	47	S592 S596 S598	360.cel
68	36	S592 S596 S598	283.cel
69	73	S592 S596 S598	ge205.cel
70	65	S596 S598	80.cel
71	57	S596 S598	547.cel
72	3	S596 S598	106.cel
73	66	S596 S598	83.cel

Genes Names

1	22	204337_at	RGS4 Chr:1q23.2
2	23	204339_s_at	RGS4 Chr:1q23.2
3	16	203798_s_at	VSNL1 Chr:2p24.3
4	93	228262_at	FLJ14503 Chr:xp22.13
5	40	206376_at	SLC6A15 Chr:12q21.3
6	91	227702_at	CYP4X1 Chr:1p33
7	41	206456_at	GABRA5 Chr:15q11.2-q12
8	139	243929_at	--- ---
9	72	219937_at	TRHDE Chr:12q15-q21
10	63	214945_at	NY-REN-7 Chr:5q35.3
11	8	1556366_s_at	FLJ33708 Chr:6p24.3
12	69	219425_at	SULT4A1 Chr:22q13.2-q13.31
13	3	1553864_at	DKFZp761H2121 Chr:10q26.13
14	43	206678_at	GABRA1 Chr:5q34-q35
15	113	233002_at	KIAA1622 Chr:14q32.2
16	101	230137_at	FLJ30834 Chr:4q27
17	73	220030_at	STYK1 Chr:12p13.31
18	44	206780_at	GAD2 Chr:10p11.23
19	7	1556351_at	HCN1 Chr:5p12
20	5	1556095_at	UNC13C Chr:15q21.1
21	19	204081_at	NRGN Chr:11q24
22	56	213921_at	SST Chr:3q28
23	32	205113_at	NEF3 Chr:8p21
24	21	204229_at	SLC17A7 Chr:19q13
25	135	242404_at	--- ---
26	1	1552714_at	CREG2 Chr:2q12.1
27	108	231489_x_at	--- ---
28	37	205827_at	CCK Chr:3p22-p21.3
29	140	244118_at	GABRA1 Chr:5q34-q35
30	2	1553422_s_at	A2BP1 Chr:16p13.3
31	9	1557122_s_at	--- ---
32	81	224650_at	MAL2 Chr:8q23
33	18	203999_at	SYT1 Chr:12cen-q21
34	50	210247_at	SYN2 Chr:3p25
35	112	232426_at	--- ---
36	141	52837_at	KIAA1644 Chr:22q13
37	74	220359_s_at	ARPP-21 Chr:3p22.1
38	75	221217_s_at	A2BP1 Chr:16p13.3
39	17	203998_s_at	SYT1 Chr:12cen-q21
40	49	210227_at	DLGAP2 Chr:8p23
41	6	1556096_s_at	UNC13C Chr:15q21.1
42	105	230551_at	--- ---
43	120	237384_x_at	--- ---
44	119	236456_at	PTPN5 Chr:11p15.1
45	132	241807_x_at	--- ---
46	35	205635_at	HAPIP Chr:3q21.2
47	57	214044_at	RYR2 Chr:1q42.1-q43
48	11	1568612_at	GABRG2 Chr:5q31.1-q33.1
49	95	229039_at	SYN2 Chr:3p25
50	25	204546_at	KIAA0513 Chr:16q24.1
51	14	202507_s_at	SNAP25 Chr:20p12-p11.2
52	71	219671_at	HPCAL4 Chr:1p34.2
53	84	226086_at	SYT13 Chr:11p12-p11
54	34	205414_s_at	KIAA0672 Chr:17p12
55	70	219659_at	ATP8A2 Chr:13q12-13
56	48	210040_at	SLC12A5 Chr:20q13.12
57	130	241399_at	TAFA2 Chr:12q13.3-q14.1
58	83	225111_s_at	NAPB Chr:20p12.3-p11.21
59	127	239765_at	--- ---
60	86	227053_at	PACSIN1 Chr:6p21.3
61	64	214956_at	--- ---
62	123	239357_at	--- ---
63	58	214098_at	KIAA1107 Chr:1p22.1
64	62	214811_at	KIAA0318 Chr:12q24.33
65	80	224209_s_at	GDA Chr:9q21.11-21.33
66	36	205691_at	SYNGR3 Chr:16p13
67	46	209726_at	CA11 Chr:19q13.3
68	124	239579_at	ABHD7 Chr:1p22.1
69	79	224164_at	TPM3 Chr:1q21.2
70	96	229254_at	DKFZp761N1114 Chr:1q32.1
71	131	241672_at	LOC400120 Chr:13q13.2
72	65	215241_at	TMEM16C Chr:11p14.3
73	13	202260_s_at	STXBP1 Chr:9q34.1
74	39	206196_s_at	RPIP8 Chr:17q21.31
75	77	223529_at	SYT4 Chr:18q12.3
76	27	204722_at	SCN3B Chr:11q24.1
77	60	214230_at	CDC42 Chr:1p36.1
78	115	235066_at	MAP4 Chr:3p21
79	78	223654_s_at	BRUNOL4 Chr:18q12
80	122	238966_at	BRUNOL4 Chr:18q12
81	47	210016_at	MYT1L Chr:2p25.3
82	98	229300_at	--- ---
83	138	243666_at	BRUNOL4 Chr:18q12
84	15	202712_s_at	CKMT1 Chr:15q15
85	28	204723_at	SCN3B Chr:11q24.1
86	103	230262_at	--- ---
87	136	242999_at	ARHGEF7 Chr:13q34
88	45	209556_at	NCDN Chr:1p34.3
89	85	226382_at	LOC283070 Chr:10p14
90	10	1559545_at	--- ---
91	67	218623_at	HMP19 Chr:5q35.2
92	100	230076_at	FLJ10156 Chr:17p13.2
93	121	238786_at	--- ---
94	55	213904_at	--- ---
95	68	219308_s_at	AK5 Chr:1p31
96	106	230698_at	--- ---
97	128	239767_at	--- ---
98	20	204134_at	PDE2A Chr:11q13.3
99	4	1555958_at	CRTAC1 Chr:10q22
100	24	204465_s_at	INA Chr:10q24.33
101	38	206013_s_at	ACTL6 Chr:7q22
102	30	204869_at	PCSK2 Chr:20p11.2
103	61	214376_at	--- ---
104	110	232305_at	HMGCLL1 Chr:6p12.1
105	118	236448_at	UNC5A Chr:5q35.3
106	102	230255_at	GABRD Chr:1p36.3
107	129	241382_at	--- ---
108	59	214111_at	OPCML Chr:11q25
109	26	204697_s_at	CHGA Chr:14q32
110	76	223500_at	CPLX1 Chr:4p16.3
111	87	227226_at	C6orf117 Chr:6q15
112	97	229294_at	JPH3 Chr:16q24.3
113	107	230932_at	--- ---
114	104	230497_at	BRUNOL5 Chr:19p13
115	133	242193_at	--- Chr:8q12.3
116	125	239671_at	--- ---
117	31	204953_at	SNAP91 Chr:6q15
118	88	227240_at	NGEF Chr:2q37
119	90	227690_at	GABRB3 Chr:15q11.2-q12
120	99	229724_at	GABRB3 Chr:15q11.2-q12
121	111	232411_at	--- ---
122	116	235230_at	--- ---
123	114	233139_at	--- ---
124	117	236166_at	LOC285147 Chr:2p25.2
125	12	202073_at	OPTN Chr:10p14
126	33	205257_s_at	AMPH Chr:7p14-p13
127	54	213307_at	SHANK2 Chr:11q13.2
128	29	204763_s_at	GNAO1 Chr:16q13
129	89	227641_at	MGC33974 Chr:16p13.3
130	51	210721_s_at	PAK7 Chr:20p12
131	92	227830_at	GABRB3 Chr:15q11.2-q12
132	109	231986_at	RIMS1 Chr:6q12-q13
133	137	243163_at	--- ---
134	52	212473_s_at	MICAL2 Chr:11p15.3
135	42	206552_s_at	TAC1 Chr:7q21-q22
136	94	229029_at	--- ---
137	53	213280_at	GARNL4 Chr:17p13.3
138	66	216086_at	SV2C Chr:5q13.3
139	82	224801_at	NDFIP2 Chr:13q22.2
140	126	239678_at	--- ---
141	134	242344_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	17
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 06:24:58

S5_using_G17

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=17)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC