S5_using_G16

Super-paramagnetic Clustering of 73 points in a 49 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=7)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	16	S586	148.cel
2	19	S586	1553.cel
3	4	S586	1076.cel
4	25	S586	1780.cel
5	18	S591	15.cel
6	65	S591	80.cel
7	69	S591	93.cel
8	53	S589 S590 S591	461.cel
9	3	S589 S590 S591	106.cel
10	43	S588 S589 S590 S591	344.cel
11	14	S588 S589 S590 S591	1453.cel
12	40	S588 S589 S590 S591	300.cel
13	50	S588 S589 S590 S591	428.cel
14	73	S588 S589 S590 S591	ge205.cel
15	8	S588 S589 S590 S591	1308.cel
16	71	S584 S588 S589 S590 S591	97.cel
17	52	S584 S588 S589 S590 S591	458.cel
18	51	S584 S588 S589 S590 S591	444.cel
19	55	S584 S588 S589 S590 S591	527.cel
20	22	S584 S588 S589 S590 S591	159.cel
21	66	S588 S589 S590 S591	83.cel
22	37	S588 S589 S590 S591	284.cel
23	1	S588 S589 S590 S591	100R.cel
24	64	S588 S589 S590 S591	70.cel
25	11	S588 S589 S590 S591	1399.cel
26	39	S588 S589 S590 S591	30.cel
27	12	S588 S589 S590 S591	1430.cel
28	31	S588 S589 S590 S591	242.cel
29	57	S588 S589 S590 S591	547.cel
30	62	S588 S589 S590 S591	574.cel
31	45	S588 S589 S590 S591	349.cel
32	42	S588 S589 S590 S591	328.cel
33	59	S587 S588 S589 S590 S591	563.cel
34	68	S587 S588 S589 S590 S591	90.cel
35	5	S587 S588 S589 S590 S591	12.cel
36	21	S587 S588 S589 S590 S591	157.cel
37	26	S588 S589 S590 S591	1854R.cel
38	29	S588 S589 S590 S591	222.cel
39	63	S585 S588 S589 S590 S591	65R.cel
40	56	S585 S588 S589 S590 S591	528bis.cel
41	38	S585 S588 S589 S590 S591	288.cel
42	10	S585 S588 S589 S590 S591	1360.cel
43	24	S588 S589 S590 S591	1622R.cel
44	34	S588 S589 S590 S591	269.cel
45	7	S588 S589 S590 S591	129.cel
46	36	S588 S589 S590 S591	283.cel
47	27	S588 S589 S590 S591	190.cel
48	30	S588 S589 S590 S591	236.cel
49	15	S588 S589 S590 S591	147.cel
50	70	S588 S589 S590 S591	94bis.cel
51	46	S588 S589 S590 S591	356bis.cel
52	6	S588 S589 S590 S591	1284.cel
53	28	S588 S589 S590 S591	218.cel
54	49	S588 S589 S590 S591	396.cel
55	17	S588 S589 S590 S591	1497R.cel
56	54	S588 S589 S590 S591	506.cel
57	23	S588 S589 S590 S591	1621.cel
58	32	S589 S590 S591	246.cel
59	44	S589 S590 S591	345.cel
60	60	S589 S590 S591	566.cel
61	35	S589 S590 S591	274.cel
62	61	S589 S590 S591	57.cel
63	9	S589 S590 S591	1317.cel
64	13	S589 S590 S591	1437.cel
65	48	S589 S590 S591	390.cel
66	58	S589 S590 S591	558.cel
67	41	S590 S591	323.cel
68	20	S590 S591	155R.cel
69	33	S590 S591	254.cel
70	47	S590 S591	360.cel
71	72	S590 S591	ge197.cel
72	67	S590 S591	84.cel
73	2		104.cel

Genes Names

1	15	209291_at	ID4 Chr:6p22-p21
2	16	209292_at	ID4 Chr:6p22-p21
3	41	226933_s_at	ID4 Chr:6p22-p21
4	5	203632_s_at	GPRC5B Chr:16p12
5	14	209170_s_at	GPM6B Chr:xp22.2
6	19	209504_s_at	PLEKHB1 Chr:11q13.5-q14.1
7	11	209167_at	GPM6B Chr:Xp22.2
8	12	209168_at	GPM6B Chr:xp22.2
9	3	203540_at	GFAP Chr:17q21
10	13	209169_at	GPM6B Chr:xp22.2
11	23	209686_at	S100B Chr:21q22.3
12	34	218087_s_at	SORBS1 Chr:10q23.3-q24.1
13	35	218899_s_at	BAALC Chr:8q22.3
14	36	222780_s_at	BAALC Chr:8q22.3
15	4	203562_at	FEZ1 Chr:11q24.2
16	47	231898_x_at	SOX2OT Chr:3q26.3-q27
17	32	216033_s_at	FYN Chr:6q21
18	28	212486_s_at	FYN Chr:6q21
19	8	205433_at	BCHE Chr:3q26.1-q26.2
20	6	204469_at	PTPRZ1 Chr:7q31.3
21	10	206826_at	PMP2 Chr:8q21.3-q22.1
22	48	235127_at	PMP2 Chr:8q21.3-q22.1
23	9	205475_at	SCRG1 Chr:4q31-q32
24	24	209859_at	TRIM9 Chr:14q22.1
25	25	211596_s_at	LRIG1 Chr:3p14
26	27	212070_at	GPR56 Chr:16q13
27	31	214023_x_at	MGC8685 Chr:6p25
28	49	44783_s_at	HEY1 Chr:8q21
29	26	212062_at	ATP9A Chr:20q13.11-q13.2
30	30	213849_s_at	PPP2R2B Chr:5q31-5q32
31	20	209598_at	PNMA2 Chr:8p21.1
32	39	225491_at	SLC1A2 Chr:11p13-p12
33	40	226627_at	38238 Chr:5q31
34	1	1555471_a_at	FMN2 Chr:1q43
35	38	223618_at	FMN2 Chr:1q43
36	2	202986_at	ARNT2 Chr:15q24
37	21	209617_s_at	CTNND2 Chr:5p15.2
38	22	209618_at	CTNND2 Chr:5p15.2
39	18	209470_s_at	GPM6A Chr:4q34
40	43	228546_at	DPP6 Chr:7q36.2-q36.3
41	17	209469_at	GPM6A Chr:4q34
42	46	229053_at	LOC51760 Chr:16p13.11
43	42	228375_at	IGSF11 Chr:3q13.33
44	44	228581_at	KCNJ10 Chr:1q22-q23
45	45	228780_at	POU3F3 Chr:2q12.1
46	37	222803_at	PRTFDC1 Chr:10p12.31
47	7	204471_at	GAP43 Chr:3q13.1-q13.2
48	33	216963_s_at	GAP43 Chr:3q13.1-q13.2
49	29	213721_at	SOX2 Chr:3q26.3-q27

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	7
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 06:05:28

S5_using_G16

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=7)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC