S5_using_G14

Super-paramagnetic Clustering of 73 points in a 26 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=11)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	18	S570 S579 S581	15.cel
2	28	S570 S579 S581	218.cel
3	67	S570 S579 S581	84.cel
4	60	S570 S579 S581	566.cel
5	64	S579 S581	70.cel
6	65	S569 S571 S573 S575 S577 S580 S581	80.cel
7	31	S569 S571 S573 S575 S577 S580 S581	242.cel
8	8	S569 S571 S573 S575 S577 S580 S581	1308.cel
9	7	S569 S571 S573 S575 S577 S580 S581	129.cel
10	39	S569 S571 S573 S575 S577 S580 S581	30.cel
11	62	S569 S571 S573 S575 S577 S580 S581	574.cel
12	45	S569 S571 S573 S575 S577 S580 S581	349.cel
13	13	S569 S571 S573 S575 S577 S580 S581	1437.cel
14	24	S569 S571 S573 S575 S577 S580 S581	1622R.cel
15	46	S569 S571 S573 S575 S577 S580 S581	356bis.cel
16	30	S569 S571 S573 S575 S577 S580 S581	236.cel
17	44	S569 S571 S573 S575 S577 S580 S581	345.cel
18	23	S569 S571 S573 S575 S577 S580 S581	1621.cel
19	12	S569 S571 S573 S575 S577 S580 S581	1430.cel
20	9	S569 S571 S573 S575 S577 S580 S581	1317.cel
21	29	S569 S571 S573 S575 S577 S580 S581	222.cel
22	48	S569 S571 S573 S575 S577 S580 S581	390.cel
23	68	S569 S571 S573 S575 S577 S580 S581	90.cel
24	22	S569 S571 S573 S575 S577 S580 S581	159.cel
25	50	S569 S571 S573 S575 S577 S580 S581	428.cel
26	57	S569 S571 S573 S575 S577 S580 S581	547.cel
27	5	S569 S571 S573 S575 S577 S580 S581	12.cel
28	73	S569 S571 S573 S575 S577 S580 S581	ge205.cel
29	49	S569 S571 S573 S575 S577 S580 S581	396.cel
30	21	S569 S571 S573 S575 S577 S580 S581	157.cel
31	11	S569 S571 S573 S575 S577 S580 S581	1399.cel
32	34	S569 S571 S573 S575 S577 S580 S581	269.cel
33	54	S569 S571 S573 S575 S577 S580 S581	506.cel
34	40	S569 S571 S573 S575 S577 S580 S581	300.cel
35	51	S569 S571 S573 S575 S577 S580 S581	444.cel
36	52	S569 S571 S573 S575 S577 S580 S581	458.cel
37	55	S569 S571 S573 S575 S577 S580 S581	527.cel
38	3	S569 S571 S573 S575 S577 S580 S581	106.cel
39	17	S569 S571 S573 S575 S577 S580 S581	1497R.cel
40	69	S571 S573 S575 S577 S580 S581	93.cel
41	27	S573 S575 S577 S580 S581	190.cel
42	14	S573 S575 S577 S580 S581	1453.cel
43	53	S575 S577 S580 S581	461.cel
44	56	S575 S577 S580 S581	528bis.cel
45	42	S577 S580 S581	328.cel
46	2	S576 S580 S581	104.cel
47	10	S576 S580 S581	1360.cel
48	38	S576 S580 S581	288.cel
49	33	S576 S580 S581	254.cel
50	72	S576 S580 S581	ge197.cel
51	58	S576 S580 S581	558.cel
52	43	S580 S581	344.cel
53	16	S568 S578 S580 S581	148.cel
54	19	S568 S578 S580 S581	1553.cel
55	25	S568 S578 S580 S581	1780.cel
56	4	S568 S578 S580 S581	1076.cel
57	1	S578 S580 S581	100R.cel
58	59	S578 S580 S581	563.cel
59	41	S580 S581	323.cel
60	47	S580 S581	360.cel
61	37	S574 S580 S581	284.cel
62	36	S574 S580 S581	283.cel
63	66	S574 S580 S581	83.cel
64	70	S574 S580 S581	94bis.cel
65	71	S574 S580 S581	97.cel
66	6	S572 S580 S581	1284.cel
67	61	S572 S580 S581	57.cel
68	15	S572 S580 S581	147.cel
69	35	S572 S580 S581	274.cel
70	26		1854R.cel
71	20		155R.cel
72	63		65R.cel
73	32		246.cel

Genes Names

1	1	203180_at	ALDH1A3 Chr:15q26.3
2	2	203434_s_at	MME Chr:3q25.1-q25.2
3	6	205619_s_at	MEOX1 Chr:17q21
4	21	231766_s_at	COL12A1 Chr:6q12-q13
5	5	205431_s_at	BMP5 Chr:6p12.1
6	3	204776_at	THBS4 Chr:5q13
7	4	205430_at	BMP5 Chr:6p12.1
8	7	205713_s_at	COMP Chr:19p13.1
9	24	236035_at	--- ---
10	8	205848_at	GAS2 Chr:11p14.3-p15.2
11	12	218499_at	MST4 Chr:xq26.2
12	23	235944_at	FIBL-6 Chr:1q25.3
13	9	212414_s_at	38236 Chr:xq25
14	10	213456_at	SOSTDC1 Chr:7p21.2
15	25	239468_at	C10orf48 Chr:10p12.1
16	26	244885_at	EBF2 Chr:8p21.2
17	14	220014_at	LOC51334 Chr:5q23.2
18	15	220065_at	TNMD Chr:xq21.33-q23
19	16	226834_at	ASAM Chr:11q24.1
20	22	232090_at	--- ---
21	13	219837_s_at	C17 Chr:4p16-p15
22	17	226930_at	FNDC1 Chr:6q25
23	18	227070_at	LOC83468 Chr:12q
24	11	217525_at	UNQ564 Chr:11p15.4
25	19	227850_x_at	CDC42EP5 Chr:19q13.42
26	20	229839_at	MGC45780 Chr:8p21.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	11
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 05:26:11

S5_using_G14

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=11)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC