S5_using_G13

Super-paramagnetic Clustering of 73 points in a 39 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=14)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	3		106.cel
2	35		274.cel
3	17		1497R.cel
4	9	S566 S567	1317.cel
5	16	S564 S566 S567	148.cel
6	19	S564 S566 S567	1553.cel
7	4	S564 S566 S567	1076.cel
8	25	S564 S566 S567	1780.cel
9	33	S565 S566 S567	254.cel
10	38	S565 S566 S567	288.cel
11	10	S565 S566 S567	1360.cel
12	20	S565 S566 S567	155R.cel
13	2	S565 S566 S567	104.cel
14	22	S565 S566 S567	159.cel
15	21	S565 S566 S567	157.cel
16	32	S565 S566 S567	246.cel
17	36	S565 S566 S567	283.cel
18	55	S565 S566 S567	527.cel
19	14	S565 S566 S567	1453.cel
20	30	S565 S566 S567	236.cel
21	28	S565 S566 S567	218.cel
22	31	S565 S566 S567	242.cel
23	24	S563 S565 S566 S567	1622R.cel
24	41	S563 S565 S566 S567	323.cel
25	61	S563 S565 S566 S567	57.cel
26	13	S563 S565 S566 S567	1437.cel
27	27	S563 S565 S566 S567	190.cel
28	7	S563 S565 S566 S567	129.cel
29	34	S563 S565 S566 S567	269.cel
30	6	S563 S565 S566 S567	1284.cel
31	29	S563 S565 S566 S567	222.cel
32	49	S563 S565 S566 S567	396.cel
33	50	S563 S565 S566 S567	428.cel
34	39	S563 S565 S566 S567	30.cel
35	56	S563 S565 S566 S567	528bis.cel
36	73	S563 S565 S566 S567	ge205.cel
37	68	S563 S565 S566 S567	90.cel
38	26	S563 S565 S566 S567	1854R.cel
39	1	S563 S565 S566 S567	100R.cel
40	23	S563 S565 S566 S567	1621.cel
41	48	S563 S565 S566 S567	390.cel
42	43	S563 S565 S566 S567	344.cel
43	53	S563 S565 S566 S567	461.cel
44	58	S563 S565 S566 S567	558.cel
45	11	S563 S565 S566 S567	1399.cel
46	15	S563 S565 S566 S567	147.cel
47	42	S563 S565 S566 S567	328.cel
48	44	S563 S565 S566 S567	345.cel
49	46	S563 S565 S566 S567	356bis.cel
50	57	S563 S565 S566 S567	547.cel
51	67	S563 S565 S566 S567	84.cel
52	64	S563 S565 S566 S567	70.cel
53	70	S563 S565 S566 S567	94bis.cel
54	72	S563 S565 S566 S567	ge197.cel
55	8	S563 S565 S566 S567	1308.cel
56	47	S563 S565 S566 S567	360.cel
57	52	S563 S565 S566 S567	458.cel
58	60	S563 S565 S566 S567	566.cel
59	69	S565 S566 S567	93.cel
60	63	S565 S566 S567	65R.cel
61	51	S565 S566 S567	444.cel
62	54	S565 S566 S567	506.cel
63	66	S567	83.cel
64	71	S567	97.cel
65	18		15.cel
66	45		349.cel
67	62		574.cel
68	5		12.cel
69	40		300.cel
70	37		284.cel
71	12		1430.cel
72	65		80.cel
73	59		563.cel

Genes Names

1	4	201131_s_at	CDH1 Chr:16q22.1
2	12	206100_at	CPM Chr:12q14.3
3	5	202246_s_at	CDK4 Chr:12q14
4	6	203226_s_at	SAS Chr:12q13.3
5	7	203227_s_at	SAS Chr:12q13.3
6	1	1555385_at	GALGT Chr:12q13.3
7	19	214951_at	SLC26A10 Chr:12q13
8	13	206435_at	GALGT Chr:12q13.3
9	3	200714_x_at	OS-9 Chr:12q13
10	20	215399_s_at	OS-9 Chr:12q13
11	15	212656_at	TSFM Chr:12q13-q14
12	17	214331_at	TSFM Chr:12q13-q14
13	18	214332_s_at	TSFM Chr:12q13-q14
14	2	1568706_s_at	--- ---
15	10	205539_at	AVIL Chr:12q13.2
16	27	226546_at	--- ---
17	36	238999_at	--- ---
18	14	211832_s_at	MDM2 Chr:12q14.3-q15
19	21	217373_x_at	MDM2 Chr:12q14.3-q15
20	22	217542_at	MGC5370 Chr:12q14.3
21	9	205386_s_at	MDM2 Chr:12q14.3-q15
22	25	225160_x_at	MGC5370 Chr:12q14.3
23	29	229711_s_at	MGC5370 Chr:12q14.3
24	35	238733_at	--- ---
25	23	218768_at	NUP107 Chr:12q14.3
26	28	227678_at	KUB3 Chr:12q13.2
27	37	241765_at	CPM Chr:12q14.3
28	8	204027_s_at	METTL1 Chr:12q13
29	11	205676_at	CYP27B1 Chr:12q13.1-q13.3
30	16	213861_s_at	DKFZP586D0919 Chr:12q13.2
31	26	226454_at	LOC92979 Chr:12q13.2
32	30	229917_at	--- ---
33	31	230001_at	LOC92979 Chr:12q13.2
34	34	235721_at	DTX3 Chr:12q13.2
35	38	244675_at	RGS8 Chr:1q25
36	32	235019_at	CPM Chr:12q14.3
37	33	235706_at	CPM Chr:12q14.3
38	24	224489_at	LOC284058 Chr:17q21.32
39	39	AFFX-M27830_5_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	14
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 05:02:39

S5_using_G13

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=14)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC