S5_using_G12

Super-paramagnetic Clustering of 73 points in a 80 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	25	S560	1780.cel
2	19	S560	1553.cel
3	4	S560	1076.cel
4	16	S560	148.cel
5	18	S560	15.cel
6	65	S560	80.cel
7	28	S561 S562	218.cel
8	36	S561 S562	283.cel
9	22	S561 S562	159.cel
10	13	S561 S562	1437.cel
11	21	S561 S562	157.cel
12	46	S561 S562	356bis.cel
13	1	S561 S562	100R.cel
14	2	S561 S562	104.cel
15	32	S561 S562	246.cel
16	6	S557 S561 S562	1284.cel
17	29	S557 S561 S562	222.cel
18	41	S557 S561 S562	323.cel
19	14	S557 S561 S562	1453.cel
20	39	S557 S561 S562	30.cel
21	31	S557 S561 S562	242.cel
22	55	S557 S561 S562	527.cel
23	42	S557 S561 S562	328.cel
24	44	S557 S561 S562	345.cel
25	49	S557 S561 S562	396.cel
26	57	S561 S562	547.cel
27	20	S561 S562	155R.cel
28	54	S561 S562	506.cel
29	47	S561 S562	360.cel
30	56	S561 S562	528bis.cel
31	5	S556 S561 S562	12.cel
32	12	S556 S561 S562	1430.cel
33	11	S556 S561 S562	1399.cel
34	61	S556 S561 S562	57.cel
35	73	S556 S561 S562	ge205.cel
36	37	S556 S561 S562	284.cel
37	3	S556 S561 S562	106.cel
38	62	S556 S561 S562	574.cel
39	59	S556 S561 S562	563.cel
40	66	S556 S561 S562	83.cel
41	69	S556 S561 S562	93.cel
42	10	S561 S562	1360.cel
43	27	S561 S562	190.cel
44	8	S561 S562	1308.cel
45	34	S561 S562	269.cel
46	9	S559 S561 S562	1317.cel
47	24	S559 S561 S562	1622R.cel
48	70	S559 S561 S562	94bis.cel
49	63	S559 S561 S562	65R.cel
50	71	S559 S561 S562	97.cel
51	26	S561 S562	1854R.cel
52	30	S561 S562	236.cel
53	33	S561 S562	254.cel
54	38	S561 S562	288.cel
55	43	S561 S562	344.cel
56	52	S561 S562	458.cel
57	67	S561 S562	84.cel
58	23	S561 S562	1621.cel
59	15	S561 S562	147.cel
60	50	S561 S562	428.cel
61	58	S561 S562	558.cel
62	48	S561 S562	390.cel
63	64	S561 S562	70.cel
64	60	S561 S562	566.cel
65	68	S561 S562	90.cel
66	7	S561 S562	129.cel
67	40	S561 S562	300.cel
68	45	S561 S562	349.cel
69	17	S558 S562	1497R.cel
70	35	S555 S558 S562	274.cel
71	53	S555 S558 S562	461.cel
72	51	S555 S558 S562	444.cel
73	72	S555 S558 S562	ge197.cel

Genes Names

1	56	225415_at	BBAP Chr:3q21.1
2	53	223220_s_at	BAL Chr:3q13-q21
3	63	228531_at	FLJ20073 Chr:7q21.3
4	33	209417_s_at	IFI35 Chr:17q21
5	16	203148_s_at	TRIM14 Chr:9q31.1
6	62	228152_s_at	FLJ31033 Chr:4q32.3
7	42	214453_s_at	IFI44 Chr:1p31.1
8	47	218986_s_at	FLJ20035 Chr:4q32.3
9	45	218543_s_at	ZC3HDC1 Chr:7q34
10	70	232375_at	--- ---
11	48	219209_at	MDA5 Chr:2p24.3-q24.3
12	46	218943_s_at	DDX58 Chr:9p12
13	3	200887_s_at	STAT1 Chr:2q32.2
14	79	AFFX-HUMISGF3A/M97935_3_at	STAT1 Chr:2q32.2
15	80	AFFX-HUMISGF3A/M97935_MB_at	STAT1 Chr:2q32.2
16	35	209969_s_at	STAT1 Chr:2q32.2
17	51	219684_at	IFRG28 Chr:3q28
18	27	205552_s_at	OAS1 Chr:12q24.1
19	52	219863_at	CEB1 Chr:4q22.1-q23
20	71	235157_at	--- ---
21	44	218400_at	OAS3 Chr:12q24.2
22	25	204994_at	MX2 Chr:21q22.3
23	24	204972_at	OAS2 Chr:12q24.2
24	64	228607_at	OAS2 Chr:12q24.2
25	6	202086_at	MX1 Chr:21q22.3
26	23	204439_at	C1orf29 Chr:1p31.1
27	15	202869_at	OAS1 Chr:12q24.1
28	26	205483_s_at	G1P2 Chr:1p36.33
29	72	235276_at	EPSTI1 Chr:13q13.3
30	40	213797_at	cig5 Chr:2p25.2
31	49	219211_at	USP18 Chr:22q11.21
32	22	204415_at	G1P3 Chr:1p35
33	10	202411_at	IFI27 Chr:14q32
34	76	242625_at	cig5 Chr:2p25.2
35	59	226702_at	LOC129607 Chr:2p25.2
36	66	229450_at	IFIT4 Chr:10q24
37	50	219352_at	FLJ20637 Chr:4q22.1
38	60	226757_at	IFIT2 Chr:10q23-q25
39	17	203153_at	IFIT1 Chr:10q25-q26
40	58	226603_at	FLJ39885 Chr:7q21.3
41	67	230036_at	FLJ39885 Chr:7q21.3
42	18	203964_at	NMI Chr:2p24.3-q21.3
43	57	226474_at	NOD27 Chr:16q13
44	32	209040_s_at	PSMB8 Chr:6p21.3
45	21	204279_at	PSMB9 Chr:6p21.3
46	9	202307_s_at	TAP1 Chr:6p21.3
47	78	38241_at	BTN3A3 Chr:6p21.3
48	5	201641_at	BST2 Chr:19p13.2
49	73	235643_at	FLJ39885 Chr:7q21.3
50	77	243271_at	--- ---
51	39	213293_s_at	TRIM22 Chr:11p15
52	14	202864_s_at	SP100 Chr:2q37.1
53	13	202863_at	SP100 Chr:2q37.1
54	11	202430_s_at	PLSCR1 Chr:3q23
55	12	202446_s_at	PLSCR1 Chr:3q23
56	36	210705_s_at	TRIM5 Chr:11p15
57	34	209846_s_at	BTN3A2 Chr:6p22.1
58	43	217933_s_at	LAP3 Chr:4p15.33
59	75	241916_at	PLSCR1 Chr:3q23
60	7	202269_x_at	GBP1 Chr:1p22.2
61	20	204205_at	APOBEC3G Chr:22q13.1-q13.2
62	8	202270_at	GBP1 Chr:1p22.2
63	68	231577_s_at	GBP1 Chr:1p22.2
64	38	211911_x_at	HLA-C Chr:6p21.3
65	31	208729_x_at	HLA-B Chr:6p21.3
66	37	211368_s_at	CASP1 Chr:11q23
67	19	204070_at	RARRES3 Chr:11q23
68	2	1552703_s_at	CASP1 Chr:11q23
69	4	200904_at	HLA-E Chr:6p21.3
70	1	1552701_a_at	COP Chr:11q22
71	28	206011_at	CASP1 Chr:11q23
72	69	232024_at	HIMAP2 Chr:7q36.1
73	29	206082_at	HCP5 Chr:6p21.3
74	41	214059_at	IFI44 Chr:1p31.1
75	74	239587_at	--- ---
76	65	228617_at	HSXIAPAF1 Chr:17p13.2
77	30	206133_at	HSXIAPAF1 Chr:17p13.2
78	54	223434_at	GBP3 Chr:1p22.2
79	55	225171_at	ARHGAP18 Chr:6q23.1
80	61	227458_at	PDCD1LG1 Chr:9p24

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 04:43:05

S5_using_G12

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC