S5_using_G11

Super-paramagnetic Clustering of 73 points in a 15 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Reordered Distance Matrix
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Samples
  • Genes
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=8)

     

    Reordered Distance Matrix

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Samples

    116 S550 S553148.cel
    219 S550 S5531553.cel
    34 S550 S5531076.cel
    425 S550 S5531780.cel
    520 S553155R.cel
    638 S553288.cel
    763 S55365R.cel
    85 S55412.cel
    97 S554129.cel
    1012 S5541430.cel
    1157 S554547.cel
    1262 S554574.cel
    1311 S552 S5541399.cel
    143 S552 S554106.cel
    1537 S552 S554284.cel
    1666 S552 S55483.cel
    1736 S554283.cel
    1830 S554236.cel
    1941 S554323.cel
    202 S554104.cel
    2114 S5541453.cel
    2213 S5541437.cel
    2327 S554190.cel
    2418 S55415.cel
    2528 S554218.cel
    2633 S554254.cel
    2710 S5541360.cel
    2853 S554461.cel
    2961 S55457.cel
    3032 S554246.cel
    3160 S554566.cel
    3267 S55484.cel
    3372 S554ge197.cel
    3451 S551 S554444.cel
    351 S549 S551 S554100R.cel
    3648 S549 S551 S554390.cel
    3743 S549 S551 S554344.cel
    3864 S549 S551 S55470.cel
    3958 S549 S551 S554558.cel
    4069 S549 S551 S55493.cel
    4154 S554506.cel
    428 S5541308.cel
    436 S5541284.cel
    4434 S554269.cel
    4517 S5541497R.cel
    4621 S554157.cel
    4750 S554428.cel
    4868 S55490.cel
    4946 S554356bis.cel
    5015 S554147.cel
    5124 S5541622R.cel
    5235 S554274.cel
    5323 S5541621.cel
    5426 S5541854R.cel
    5531 S554242.cel
    5642 S554328.cel
    5752 S554458.cel
    5870 S55494bis.cel
    5973 S554ge205.cel
    6040 S554300.cel
    6139 S55430.cel
    6245 S554349.cel
    6359 S554563.cel
    6456 S554528bis.cel
    6555 S554527.cel
    6644 S554345.cel
    679 S5541317.cel
    6847 S554360.cel
    6922 S554159.cel
    7029 S554222.cel
    7149 S554396.cel
    7271 S55497.cel
    7365 S55480.cel

    Genes Names

    18206915_atNKX2-2 Chr:20pter-q11.23
    22201416_atSOX4 Chr:6p22.3
    33201417_atSOX4 Chr:6p22.3
    411569316_at--- ---
    54204913_s_atSOX11 Chr:2p25
    65204914_s_atSOX11 Chr:2p25
    76204915_s_atSOX11 Chr:2p25
    814229700_atLOC148203 Chr:19p13.11
    97205347_s_atTMSNB Chr:xq21.33-q22.3
    1012228144_atZNF300 Chr:5q33.1
    119213668_s_atSOX4 Chr:6p22.3
    1211227921_at--- ---
    1310220898_at--- ---
    1415232668_at--- ---
    1513228790_atMGC39325 Chr:8q12.1

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)8
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size1

    Created by SPC_HTML_REPORT on 13-Aug-2004 04:24:10