S5_using_G10

Super-paramagnetic Clustering of 73 points in a 95 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	13	S545	1437.cel
2	4	S545	1076.cel
3	16	S545	148.cel
4	19	S545	1553.cel
5	25	S545	1780.cel
6	7	S544 S546 S547 S548	129.cel
7	11	S543 S544 S546 S547 S548	1399.cel
8	1	S543 S544 S546 S547 S548	100R.cel
9	61	S543 S544 S546 S547 S548	57.cel
10	8	S543 S544 S546 S547 S548	1308.cel
11	27	S543 S544 S546 S547 S548	190.cel
12	44	S543 S544 S546 S547 S548	345.cel
13	18	S544 S546 S547 S548	15.cel
14	34	S544 S546 S547 S548	269.cel
15	36	S546 S547 S548	283.cel
16	12	S547 S548	1430.cel
17	40	S547 S548	300.cel
18	2	S539 S540 S542 S547 S548	104.cel
19	30	S539 S540 S542 S547 S548	236.cel
20	9	S539 S540 S542 S547 S548	1317.cel
21	6	S539 S540 S542 S547 S548	1284.cel
22	28	S539 S540 S542 S547 S548	218.cel
23	67	S539 S540 S542 S547 S548	84.cel
24	46	S539 S540 S542 S547 S548	356bis.cel
25	26	S539 S540 S542 S547 S548	1854R.cel
26	50	S539 S540 S542 S547 S548	428.cel
27	20	S539 S540 S542 S547 S548	155R.cel
28	33	S539 S540 S542 S547 S548	254.cel
29	53	S539 S540 S542 S547 S548	461.cel
30	60	S539 S540 S542 S547 S548	566.cel
31	32	S539 S540 S542 S547 S548	246.cel
32	55	S539 S540 S542 S547 S548	527.cel
33	71	S539 S540 S542 S547 S548	97.cel
34	22	S539 S540 S542 S547 S548	159.cel
35	23	S539 S540 S542 S547 S548	1621.cel
36	49	S539 S540 S542 S547 S548	396.cel
37	29	S539 S540 S542 S547 S548	222.cel
38	31	S539 S540 S542 S547 S548	242.cel
39	70	S539 S540 S542 S547 S548	94bis.cel
40	59	S539 S540 S542 S547 S548	563.cel
41	21	S539 S540 S542 S547 S548	157.cel
42	15	S539 S540 S542 S547 S548	147.cel
43	35	S539 S540 S542 S547 S548	274.cel
44	43	S539 S540 S542 S547 S548	344.cel
45	17	S539 S540 S542 S547 S548	1497R.cel
46	42	S539 S540 S542 S547 S548	328.cel
47	45	S539 S540 S542 S547 S548	349.cel
48	64	S539 S540 S542 S547 S548	70.cel
49	68	S539 S540 S542 S547 S548	90.cel
50	39	S539 S540 S542 S547 S548	30.cel
51	24	S539 S540 S542 S547 S548	1622R.cel
52	51	S539 S540 S542 S547 S548	444.cel
53	52	S539 S540 S542 S547 S548	458.cel
54	10	S539 S540 S542 S547 S548	1360.cel
55	54	S539 S540 S542 S547 S548	506.cel
56	63	S539 S540 S542 S547 S548	65R.cel
57	14	S539 S540 S542 S547 S548	1453.cel
58	41	S539 S540 S542 S547 S548	323.cel
59	57	S539 S540 S542 S547 S548	547.cel
60	66	S540 S542 S547 S548	83.cel
61	3	S542 S547 S548	106.cel
62	47	S542 S547 S548	360.cel
63	69	S547 S548	93.cel
64	48	S541 S547 S548	390.cel
65	37	S541 S547 S548	284.cel
66	73	S541 S547 S548	ge205.cel
67	38	S541 S547 S548	288.cel
68	65	S541 S547 S548	80.cel
69	58	S541 S547 S548	558.cel
70	72	S541 S547 S548	ge197.cel
71	56	S548	528bis.cel
72	5	S548	12.cel
73	62	S548	574.cel

Genes Names

1	14	203798_s_at	VSNL1 Chr:2p24.3
2	66	228262_at	FLJ14503 Chr:xp22.13
3	28	206376_at	SLC6A15 Chr:12q21.3
4	65	227702_at	CYP4X1 Chr:1p33
5	29	206456_at	GABRA5 Chr:15q11.2-q12
6	93	243929_at	--- ---
7	52	219937_at	TRHDE Chr:12q15-q21
8	44	214945_at	NY-REN-7 Chr:5q35.3
9	7	1556366_s_at	FLJ33708 Chr:6p24.3
10	49	219425_at	SULT4A1 Chr:22q13.2-q13.31
11	3	1553864_at	DKFZp761H2121 Chr:10q26.13
12	30	206678_at	GABRA1 Chr:5q34-q35
13	77	233002_at	KIAA1622 Chr:14q32.2
14	71	230137_at	FLJ30834 Chr:4q27
15	53	220030_at	STYK1 Chr:12p13.31
16	31	206780_at	GAD2 Chr:10p11.23
17	6	1556351_at	HCN1 Chr:5p12
18	4	1556095_at	UNC13C Chr:15q21.1
19	17	204081_at	NRGN Chr:11q24
20	39	213921_at	SST Chr:3q28
21	22	205113_at	NEF3 Chr:8p21
22	18	204229_at	SLC17A7 Chr:19q13
23	90	242404_at	--- ---
24	1	1552714_at	CREG2 Chr:2q12.1
25	75	231489_x_at	--- ---
26	26	205827_at	CCK Chr:3p22-p21.3
27	94	244118_at	GABRA1 Chr:5q34-q35
28	2	1553422_s_at	A2BP1 Chr:16p13.3
29	8	1557122_s_at	--- ---
30	60	224650_at	MAL2 Chr:8q23
31	16	203999_at	SYT1 Chr:12cen-q21
32	37	210247_at	SYN2 Chr:3p25
33	76	232426_at	--- ---
34	95	52837_at	KIAA1644 Chr:22q13
35	54	220359_s_at	ARPP-21 Chr:3p22.1
36	55	221217_s_at	A2BP1 Chr:16p13.3
37	15	203998_s_at	SYT1 Chr:12cen-q21
38	36	210227_at	DLGAP2 Chr:8p23
39	5	1556096_s_at	UNC13C Chr:15q21.1
40	73	230551_at	--- ---
41	80	237384_x_at	--- ---
42	79	236456_at	PTPN5 Chr:11p15.1
43	89	241807_x_at	--- ---
44	24	205635_at	HAPIP Chr:3q21.2
45	40	214044_at	RYR2 Chr:1q42.1-q43
46	10	1568612_at	GABRG2 Chr:5q31.1-q33.1
47	67	229039_at	SYN2 Chr:3p25
48	19	204546_at	KIAA0513 Chr:16q24.1
49	12	202507_s_at	SNAP25 Chr:20p12-p11.2
50	51	219671_at	HPCAL4 Chr:1p34.2
51	62	226086_at	SYT13 Chr:11p12-p11
52	23	205414_s_at	KIAA0672 Chr:17p12
53	50	219659_at	ATP8A2 Chr:13q12-13
54	35	210040_at	SLC12A5 Chr:20q13.12
55	87	241399_at	TAFA2 Chr:12q13.3-q14.1
56	61	225111_s_at	NAPB Chr:20p12.3-p11.21
57	85	239765_at	--- ---
58	64	227053_at	PACSIN1 Chr:6p21.3
59	45	214956_at	--- ---
60	83	239357_at	--- ---
61	41	214098_at	KIAA1107 Chr:1p22.1
62	43	214811_at	KIAA0318 Chr:12q24.33
63	59	224209_s_at	GDA Chr:9q21.11-21.33
64	25	205691_at	SYNGR3 Chr:16p13
65	33	209726_at	CA11 Chr:19q13.3
66	84	239579_at	ABHD7 Chr:1p22.1
67	58	224164_at	TPM3 Chr:1q21.2
68	68	229254_at	DKFZp761N1114 Chr:1q32.1
69	88	241672_at	LOC400120 Chr:13q13.2
70	46	215241_at	TMEM16C Chr:11p14.3
71	11	202260_s_at	STXBP1 Chr:9q34.1
72	27	206196_s_at	RPIP8 Chr:17q21.31
73	56	223529_at	SYT4 Chr:18q12.3
74	20	204722_at	SCN3B Chr:11q24.1
75	42	214230_at	CDC42 Chr:1p36.1
76	78	235066_at	MAP4 Chr:3p21
77	57	223654_s_at	BRUNOL4 Chr:18q12
78	82	238966_at	BRUNOL4 Chr:18q12
79	34	210016_at	MYT1L Chr:2p25.3
80	69	229300_at	--- ---
81	92	243666_at	BRUNOL4 Chr:18q12
82	13	202712_s_at	CKMT1 Chr:15q15
83	21	204723_at	SCN3B Chr:11q24.1
84	72	230262_at	--- ---
85	91	242999_at	ARHGEF7 Chr:13q34
86	32	209556_at	NCDN Chr:1p34.3
87	63	226382_at	LOC283070 Chr:10p14
88	9	1559545_at	--- ---
89	47	218623_at	HMP19 Chr:5q35.2
90	70	230076_at	FLJ10156 Chr:17p13.2
91	81	238786_at	--- ---
92	38	213904_at	--- ---
93	48	219308_s_at	AK5 Chr:1p31
94	74	230698_at	--- ---
95	86	239767_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	12
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 04:06:24

S5_using_G10

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC