S4_using_G9

Super-paramagnetic Clustering of 69 points in a 32 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=7)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	17	S347	155R.cel
2	59	S347	65R.cel
3	68	S347	ge197.cel
4	56	S347	566.cel
5	55	S336 S343 S346 S347	563.cel
6	39	S336 S343 S346 S347	344.cel
7	54	S336 S343 S346 S347	558.cel
8	12	S336 S343 S346 S347	1437.cel
9	29	S343 S346 S347	254.cel
10	51	S343 S346 S347	527.cel
11	19	S343 S346 S347	159.cel
12	28	S343 S346 S347	246.cel
13	69	S343 S346 S347	ge205.cel
14	20	S343 S346 S347	1621.cel
15	14	S343 S346 S347	147.cel
16	24	S343 S346 S347	218.cel
17	1	S343 S346 S347	100R.cel
18	30	S343 S346 S347	269.cel
19	2	S343 S346 S347	104.cel
20	38	S343 S346 S347	328.cel
21	11	S343 S346 S347	1430.cel
22	22	S343 S346 S347	1854R.cel
23	31	S343 S346 S347	274.cel
24	43	S343 S346 S347	360.cel
25	4	S343 S346 S347	12.cel
26	8	S343 S346 S347	1317.cel
27	64	S343 S346 S347	90.cel
28	15	S343 S346 S347	1497R.cel
29	50	S343 S346 S347	506.cel
30	6	S343 S346 S347	129.cel
31	35	S343 S346 S347	30.cel
32	53	S343 S346 S347	547.cel
33	26	S343 S346 S347	236.cel
34	47	S343 S346 S347	444.cel
35	16	S341 S342 S346 S347	15.cel
36	27	S338 S341 S342 S346 S347	242.cel
37	23	S338 S341 S342 S346 S347	190.cel
38	32	S338 S341 S342 S346 S347	283.cel
39	40	S338 S341 S342 S346 S347	345.cel
40	10	S342 S346 S347	1399.cel
41	21	S342 S346 S347	1622R.cel
42	41	S337 S340 S342 S346 S347	349.cel
43	36	S337 S340 S342 S346 S347	300.cel
44	65	S337 S340 S342 S346 S347	93.cel
45	7	S337 S340 S342 S346 S347	1308.cel
46	34	S337 S340 S342 S346 S347	288.cel
47	9	S340 S342 S346 S347	1360.cel
48	61	S340 S342 S346 S347	80.cel
49	33	S340 S342 S346 S347	284.cel
50	52	S340 S342 S346 S347	528bis.cel
51	48	S340 S342 S346 S347	458.cel
52	44	S340 S342 S346 S347	390.cel
53	62	S340 S342 S346 S347	83.cel
54	18	S340 S342 S346 S347	157.cel
55	66	S340 S342 S346 S347	94bis.cel
56	60	S340 S342 S346 S347	70.cel
57	42	S346 S347	356bis.cel
58	46	S339 S344 S345	428.cel
59	45	S339 S344 S345	396.cel
60	5	S339 S344 S345	1284.cel
61	25	S339 S344 S345	222.cel
62	13	S339 S344 S345	1453.cel
63	58	S344 S345	574.cel
64	67	S344 S345	97.cel
65	37	S345	323.cel
66	49	S345	461.cel
67	57	S345	57.cel
68	3	S345	106.cel
69	63	S345	84.cel

Genes Names

1	3	200632_s_at	NDRG1 Chr:8q24.3
2	6	202497_x_at	SLC2A3 Chr:12p13.3
3	11	203108_at	RAI3 Chr:12p13-p12.3
4	7	202627_s_at	SERPINE1 Chr:7q21.3-q22
5	8	202859_x_at	IL8 Chr:4q13-q21
6	13	203438_at	STC2 Chr:5q35.2
7	9	202912_at	ADM Chr:11p15.4
8	10	202934_at	HK2 Chr:2p13
9	19	212171_x_at	VEGF Chr:6p12
10	5	201169_s_at	BHLHB2 Chr:3p26
11	2	1554452_a_at	HIG2 Chr:7q32.2
12	30	226452_at	PDK1 Chr:2q31.1
13	1	1553392_at	FLJ25818 Chr:17q24.1
14	16	210512_s_at	VEGF Chr:6p12
15	18	211527_x_at	VEGF Chr:6p12
16	28	222646_s_at	ERO1L Chr:14q22.1
17	4	200737_at	PGK1 Chr:xq13
18	23	218507_at	HIG2 Chr:7q32.2
19	26	221009_s_at	ANGPTL4 Chr:19p13.3
20	12	203282_at	GBE1 Chr:3p12.3
21	17	210513_s_at	VEGF Chr:6p12
22	14	204298_s_at	LOX Chr:5q23.2
23	21	215446_s_at	--- ---
24	27	221123_x_at	ZNF395 Chr:8p21.1
25	29	223216_x_at	ZNF395 Chr:8p21.1
26	22	218149_s_at	ZNF395 Chr:8p21.1
27	31	232693_s_at	ZNF395 Chr:8p21.1
28	20	212775_at	KIAA0657 Chr:2q36.1
29	15	209122_at	ADFP Chr:9p22.1-p21.3
30	25	219434_at	TREM1 Chr:6p21.1
31	32	242517_at	GPR54 Chr:19p13.3
32	24	219410_at	FLJ10134 Chr:3q12.3

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	7
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 18:59:00

S4_using_G9

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=7)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC