S4_using_G8

Super-paramagnetic Clustering of 69 points in a 91 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=18)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	18		157.cel
2	24		218.cel
3	27		242.cel
4	2		104.cel
5	26	S335	236.cel
6	37	S335	323.cel
7	17	S335	155R.cel
8	6	S334 S335	129.cel
9	30	S334 S335	269.cel
10	13	S334 S335	1453.cel
11	4	S334 S335	12.cel
12	14	S334 S335	147.cel
13	53	S334 S335	547.cel
14	3	S334 S335	106.cel
15	42	S334 S335	356bis.cel
16	20	S334 S335	1621.cel
17	64	S334 S335	90.cel
18	5	S334 S335	1284.cel
19	11	S334 S335	1430.cel
20	49	S334 S335	461.cel
21	57	S334 S335	57.cel
22	62	S334 S335	83.cel
23	25	S334 S335	222.cel
24	58	S334 S335	574.cel
25	10	S334 S335	1399.cel
26	66	S334 S335	94bis.cel
27	31	S334 S335	274.cel
28	9	S334 S335	1360.cel
29	43	S334 S335	360.cel
30	33	S334 S335	284.cel
31	1	S334 S335	100R.cel
32	8	S334 S335	1317.cel
33	21	S334 S335	1622R.cel
34	15	S334 S335	1497R.cel
35	22	S334 S335	1854R.cel
36	44	S334 S335	390.cel
37	32	S334 S335	283.cel
38	12	S334 S335	1437.cel
39	19	S334 S335	159.cel
40	28	S334 S335	246.cel
41	35	S334 S335	30.cel
42	36	S334 S335	300.cel
43	47	S334 S335	444.cel
44	54	S334 S335	558.cel
45	65	S334 S335	93.cel
46	46	S334 S335	428.cel
47	56	S334 S335	566.cel
48	50	S334 S335	506.cel
49	69	S334 S335	ge205.cel
50	48	S334 S335	458.cel
51	39	S334 S335	344.cel
52	52	S334 S335	528bis.cel
53	59	S334 S335	65R.cel
54	23	S334 S335	190.cel
55	7	S334 S335	1308.cel
56	16	S334 S335	15.cel
57	40	S334 S335	345.cel
58	45	S334 S335	396.cel
59	38	S334 S335	328.cel
60	51	S334 S335	527.cel
61	55	S334 S335	563.cel
62	41	S334 S335	349.cel
63	61	S334 S335	80.cel
64	67	S334 S335	97.cel
65	60	S334 S335	70.cel
66	29	S335	254.cel
67	34	S335	288.cel
68	68	S335	ge197.cel
69	63	S335	84.cel

Genes Names

1	66	218854_at	SART2 Chr:6q22
2	21	203561_at	FCGR2A Chr:1q23
3	62	217388_s_at	KYNU Chr:2q22.3
4	11	201743_at	CD14 Chr:5q31.1
5	46	211429_s_at	--- ---
6	8	201422_at	IFI30 Chr:19p13.1
7	36	206584_at	LY96 Chr:8q13.3
8	32	204971_at	CSTA Chr:3q21
9	68	219607_s_at	MS4A4A Chr:11q12
10	12	202546_at	VAMP8 Chr:2p12-p11.2
11	73	223280_x_at	MS4A6A Chr:11q12.1
12	76	224356_x_at	MS4A6A Chr:11q12.1
13	14	202833_s_at	SERPINA1 Chr:14q32.1
14	26	204174_at	ALOX5AP Chr:13q12
15	88	230550_at	MS4A6A Chr:11q12.1
16	67	219386_s_at	SLAMF8 Chr:1q23.1
17	9	201487_at	CTSC Chr:11q14.1-q14.3
18	69	219666_at	MS4A6A Chr:11q12.1
19	27	204232_at	FCER1G Chr:1q23
20	43	210176_at	TLR1 Chr:4p14
21	59	214770_at	MSR1 Chr:8p22
22	4	1554899_s_at	FCER1G Chr:1q23
23	13	202803_s_at	ITGB2 Chr:21q22.3
24	6	1555728_a_at	MS4A4A Chr:11q12
25	17	202953_at	C1QB Chr:1p36.3-p34.1
26	65	218232_at	C1QA Chr:1p36.3-p34.1
27	56	213566_at	RNASE6 Chr:14q11.2
28	77	225353_s_at	C1QG Chr:1p36.11
29	52	212588_at	PTPRC Chr:1q31-q32
30	5	1555349_a_at	ITGB2 Chr:21q22.3
31	31	204959_at	MNDA Chr:1q22
32	23	204007_at	FCGR3A Chr:1q23
33	10	201721_s_at	LAPTM5 Chr:1p34
34	30	204787_at	Z39IG Chr:xq12-q13.3
35	24	204122_at	TYROBP Chr:19q13.1
36	15	202901_x_at	CTSS Chr:1q21
37	35	206111_at	RNASE2 Chr:14q24-q31
38	83	228532_at	MGC24133 Chr:1p13.2
39	57	214467_at	GPR65 Chr:14q31-q32.1
40	22	204006_s_at	FCGR3A Chr:1q23
41	1	1552316_a_at	IMAP1 Chr:7q36.1
42	37	208018_s_at	HCK Chr:20q11-q12
43	89	232617_at	CTSS Chr:1q21
44	18	202957_at	HCLS1 Chr:3q13
45	16	202902_s_at	CTSS Chr:1q21
46	28	204446_s_at	ALOX5 Chr:10q11.2
47	84	229560_at	TLR8 Chr:xp22
48	33	205786_s_at	ITGAM Chr:16p11.2
49	71	220330_s_at	SAMSN1 Chr:21q11
50	81	227266_s_at	FYB Chr:5p13.1
51	72	221698_s_at	CLECSF12 Chr:12p13.2-p12.3
52	20	203416_at	CD53 Chr:1p13
53	86	229937_x_at	LILRB1 Chr:19q13.4
54	61	216950_s_at	FCGR1A Chr:1q21.2-q21.3
55	44	210314_x_at	TNFSF13 Chr:17p13.1
56	3	1552807_a_at	SIGLEC10 Chr:19q13.3
57	79	226068_at	SYK Chr:9q22
58	78	225502_at	DOCK8 Chr:9p24.3
59	64	217983_s_at	RNASET2 Chr:6q27
60	19	203104_at	CSF1R Chr:5q33-q35
61	90	232843_s_at	DOCK8 Chr:9p24.3
62	58	214511_x_at	FCGR1A Chr:1q21.2-q21.3
63	82	227346_at	ZNFN1A1 Chr:7p13-p11.1
64	63	217478_s_at	HLA-DMA Chr:6p21.3
65	40	209312_x_at	HLA-DRB1 Chr:6p21.3
66	45	210982_s_at	HLA-DRA Chr:6p21.3
67	60	215193_x_at	HLA-DRB3 Chr:6p21.3
68	38	208306_x_at	HLA-DRB3 Chr:6p21.3
69	39	208894_at	HLA-DRA Chr:6p21.3
70	29	204670_x_at	HLA-DRB3 Chr:6p21.3
71	41	209619_at	CD74 Chr:5q32
72	54	212998_x_at	HLA-DQB1 Chr:6p21.3
73	47	211654_x_at	HLA-DQB1 Chr:6p21.3
74	51	211991_s_at	HLA-DPA1 Chr:6p21.3
75	74	223343_at	MS4A7 Chr:11q12
76	7	201137_s_at	HLA-DPB1 Chr:6p21.3
77	48	211656_x_at	HLA-DQB1 Chr:6p21.3
78	42	209823_x_at	HLA-DQB1 Chr:6p21.3
79	2	1552386_at	FLJ33641 Chr:5q12.1
80	55	213537_at	HLA-DPA1 Chr:6p21.3
81	53	212671_s_at	HLA-DQA1 Chr:6p21.3
82	80	227265_at	--- ---
83	50	211990_at	HLA-DPA1 Chr:6p21.3
84	87	230391_at	--- ---
85	70	220146_at	TLR7 Chr:xp22.3
86	34	205997_at	ADAM28 Chr:8p21.2
87	75	223620_at	GPR34 Chr:xp11.4-p11.3
88	49	211742_s_at	EVI2B Chr:17q11.2
89	85	229723_at	TAGAP Chr:6q25.3
90	25	204150_at	STAB1 Chr:3p21.31
91	91	38487_at	STAB1 Chr:3p21.31

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	18
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 18:38:25

S4_using_G8

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=18)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC