S4_using_G6

Super-paramagnetic Clustering of 69 points in a 84 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=6)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	63	S333	84.cel
2	56	S333	566.cel
3	17	S333	155R.cel
4	66	S322 S326 S330 S332 S333	94bis.cel
5	2	S322 S326 S330 S332 S333	104.cel
6	26	S322 S326 S330 S332 S333	236.cel
7	3	S322 S326 S330 S332 S333	106.cel
8	14	S322 S326 S330 S332 S333	147.cel
9	8	S322 S326 S330 S332 S333	1317.cel
10	42	S322 S326 S330 S332 S333	356bis.cel
11	6	S326 S330 S332 S333	129.cel
12	33	S326 S330 S332 S333	284.cel
13	41	S326 S330 S332 S333	349.cel
14	11	S330 S332 S333	1430.cel
15	10	S330 S332 S333	1399.cel
16	69	S330 S332 S333	ge205.cel
17	15	S327 S329 S330 S332 S333	1497R.cel
18	64	S321 S327 S329 S330 S332 S333	90.cel
19	53	S321 S327 S329 S330 S332 S333	547.cel
20	19	S321 S327 S329 S330 S332 S333	159.cel
21	39	S321 S327 S329 S330 S332 S333	344.cel
22	48	S329 S330 S332 S333	458.cel
23	5	S328 S330 S332 S333	1284.cel
24	30	S328 S330 S332 S333	269.cel
25	68	S328 S330 S332 S333	ge197.cel
26	13	S319 S324 S328 S330 S332 S333	1453.cel
27	50	S319 S324 S328 S330 S332 S333	506.cel
28	46	S319 S324 S328 S330 S332 S333	428.cel
29	21	S319 S324 S328 S330 S332 S333	1622R.cel
30	24	S319 S324 S328 S330 S332 S333	218.cel
31	57	S319 S324 S328 S330 S332 S333	57.cel
32	31	S320 S324 S328 S330 S332 S333	274.cel
33	43	S320 S324 S328 S330 S332 S333	360.cel
34	36	S320 S324 S328 S330 S332 S333	300.cel
35	45	S320 S324 S328 S330 S332 S333	396.cel
36	47	S320 S324 S328 S330 S332 S333	444.cel
37	38	S330 S332 S333	328.cel
38	35	S330 S332 S333	30.cel
39	4	S330 S332 S333	12.cel
40	58	S330 S332 S333	574.cel
41	44	S330 S332 S333	390.cel
42	60	S330 S332 S333	70.cel
43	1	S330 S332 S333	100R.cel
44	55	S325 S330 S332 S333	563.cel
45	20	S325 S330 S332 S333	1621.cel
46	25	S325 S330 S332 S333	222.cel
47	27	S325 S330 S332 S333	242.cel
48	29	S325 S330 S332 S333	254.cel
49	7	S325 S330 S332 S333	1308.cel
50	12	S325 S330 S332 S333	1437.cel
51	40	S325 S330 S332 S333	345.cel
52	52	S325 S330 S332 S333	528bis.cel
53	61	S325 S330 S332 S333	80.cel
54	54	S325 S330 S332 S333	558.cel
55	23	S325 S330 S332 S333	190.cel
56	51	S325 S330 S332 S333	527.cel
57	18	S330 S332 S333	157.cel
58	62	S330 S332 S333	83.cel
59	9	S330 S332 S333	1360.cel
60	49	S330 S332 S333	461.cel
61	22	S332 S333	1854R.cel
62	67	S332 S333	97.cel
63	34	S323 S331	288.cel
64	16	S323 S331	15.cel
65	37	S323 S331	323.cel
66	32	S323 S331	283.cel
67	59	S323 S331	65R.cel
68	28	S331	246.cel
69	65	S331	93.cel

Genes Names

1	27	204825_at	MELK Chr:9p13.1
2	19	204162_at	KNTC2 Chr:18p11.31
3	4	202503_s_at	KIAA0101 Chr:15q22.1
4	40	209773_s_at	RRM2 Chr:2p25-p24
5	3	201890_at	RRM2 Chr:2p25-p24
6	49	218039_at	NUSAP1 Chr:15q14
7	66	222848_at	FKSG14 Chr:5p15.2-q12.3
8	52	218662_s_at	HCAP-G Chr:4p16-p15
9	14	203755_at	BUB1B Chr:15q15
10	46	214710_s_at	CCNB1 Chr:5q12
11	16	204026_s_at	ZWINT Chr:10q21-q22
12	9	203213_at	CDC2 Chr:10q21.1
13	22	204244_s_at	ASK Chr:7q21.3
14	36	208079_s_at	STK6 Chr:20q13.2-q13.3
15	2	201292_at	TOP2A Chr:17q21-q22
16	41	210052_s_at	TPX2 Chr:20q11.2
17	1	201291_s_at	TOP2A Chr:17q21-q22
18	7	202705_at	CCNB2 Chr:15q21.3
19	54	218755_at	KIF20A Chr:5q31
20	10	203358_s_at	EZH2 Chr:7q35-q36
21	15	203764_at	DLG7 Chr:14q22.2
22	57	219148_at	TOPK Chr:8p21.2
23	8	202870_s_at	CDC20 Chr:1p34.1
24	75	228273_at	FLJ11029 Chr:17q23.2
25	53	218663_at	HCAP-G Chr:4p16-p15
26	59	219787_s_at	ECT2 Chr:3q26.1-q26.2
27	77	228729_at	CCNB1 Chr:5q12
28	12	203554_x_at	PTTG1 Chr:5q35.1
29	18	204146_at	PIR51 Chr:12p13.2-p13.1
30	50	218355_at	KIF4A Chr:xq13.1
31	28	204962_s_at	CENPA Chr:2p24-p21
32	56	218883_s_at	KLIP1 Chr:4q35.1
33	48	218009_s_at	PRC1 Chr:15q26.1
34	42	210559_s_at	CDC2 Chr:10q21.1
35	35	207828_s_at	CENPF Chr:1q32-q41
36	39	209642_at	BUB1 Chr:2q14
37	65	222740_at	ATAD2 Chr:8q24.13
38	68	223381_at	CDCA1 Chr:1q23.2
39	58	219306_at	KNSL7 Chr:3p21.32
40	44	213226_at	PMSCL1 Chr:4q27
41	60	219918_s_at	ASPM Chr:1q31
42	80	230165_at	SGOL2 Chr:2q33.2
43	23	204444_at	KIF11 Chr:10q24.1
44	29	205046_at	CENPE Chr:4q24-q25
45	11	203362_s_at	MAD2L1 Chr:4q27
46	43	213007_at	FLJ10719 Chr:15q25-q26
47	82	236641_at	KIF14 Chr:1pter-q31.3
48	26	204822_at	TTK Chr:6q13-q21
49	38	209172_s_at	CENPF Chr:1q32-q41
50	76	228323_at	AF15Q14 Chr:15q14
51	71	226980_at	XTP1 Chr:5q12.1
52	63	222077_s_at	RACGAP1 Chr:12q13.12
53	51	218585_s_at	RAMP Chr:1q32.1-q32.2
54	64	222680_s_at	RAMP Chr:1q32.1-q32.2
55	25	204641_at	NEK2 Chr:1q32.2-q41
56	83	238756_at	LOC283431 Chr:12q23.3
57	69	224428_s_at	CDCA7 Chr:2q31
58	6	202589_at	TYMS Chr:18p11.32
59	67	223229_at	HSPC150 Chr:1q32.1
60	5	202580_x_at	FOXM1 Chr:12p13
61	20	204170_s_at	CKS2 Chr:9q22
62	55	218875_s_at	FBXO5 Chr:6q25-q26
63	62	222039_at	LOC146909 Chr:17q21.31
64	70	225834_at	MGC57827 ---
65	72	227249_at	NDE1 Chr:16p13.11
66	84	242560_at	FANCD2 Chr:3p26
67	32	206102_at	KIAA0186 Chr:20p11.21
68	17	204033_at	TRIP13 Chr:5p15.33
69	37	208808_s_at	HMGB2 Chr:4q31
70	74	228033_at	E2F7 Chr:12q21.1
71	34	207165_at	HMMR Chr:5q33.2-qter
72	79	229490_s_at	IQGAP3 Chr:1q23.1
73	81	235425_at	SGOL2 Chr:2q33.2
74	47	216237_s_at	MCM5 Chr:22q13.1
75	13	203560_at	GGH Chr:8q12.2
76	21	204240_s_at	SMC2L1 Chr:9q31.2
77	33	206632_s_at	APOBEC3B Chr:22q13.1-q13.2
78	61	220239_at	KLHL7 Chr:7p15.3
79	45	213906_at	MYBL1 Chr:8q22
80	24	204510_at	CDC7 Chr:1p22
81	73	227350_at	--- ---
82	31	205967_at	HIST1H4C Chr:6p21.3
83	30	205394_at	CHEK1 Chr:11q24-q24
84	78	229305_at	KLIP1 Chr:4q35.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	6
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 18:13:47

S4_using_G6

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=6)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC