S4_using_G5

Super-paramagnetic Clustering of 69 points in a 68 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=9)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	9		1360.cel
2	2		104.cel
3	47	S318	444.cel
4	12	S318	1437.cel
5	69	S318	ge205.cel
6	13	S318	1453.cel
7	1	S318	100R.cel
8	51	S318	527.cel
9	23	S318	190.cel
10	49	S318	461.cel
11	27	S315 S317	242.cel
12	41	S315 S317	349.cel
13	4	S312 S313 S314 S315 S317	12.cel
14	10	S312 S313 S314 S315 S317	1399.cel
15	6	S312 S313 S314 S315 S317	129.cel
16	33	S312 S313 S314 S315 S317	284.cel
17	11	S313 S314 S315 S317	1430.cel
18	7	S313 S314 S315 S317	1308.cel
19	16	S313 S314 S315 S317	15.cel
20	58	S313 S314 S315 S317	574.cel
21	61	S313 S314 S315 S317	80.cel
22	46	S314 S315 S317	428.cel
23	52	S314 S315 S317	528bis.cel
24	62	S315 S317	83.cel
25	3	S315 S317	106.cel
26	14	S315 S317	147.cel
27	45	S315 S317	396.cel
28	67	S315 S317	97.cel
29	21	S315 S317	1622R.cel
30	15	S315 S317	1497R.cel
31	20	S315 S317	1621.cel
32	18	S315 S317	157.cel
33	24	S315 S317	218.cel
34	5	S315 S317	1284.cel
35	31	S315 S317	274.cel
36	39	S315 S317	344.cel
37	30	S315 S317	269.cel
38	66	S315 S317	94bis.cel
39	17	S315 S317	155R.cel
40	28	S315 S317	246.cel
41	29	S315 S317	254.cel
42	43	S315 S317	360.cel
43	57	S315 S317	57.cel
44	8	S315 S317	1317.cel
45	50	S315 S317	506.cel
46	60	S315 S317	70.cel
47	64	S315 S317	90.cel
48	35	S315 S317	30.cel
49	25	S315 S317	222.cel
50	42	S315 S317	356bis.cel
51	55	S315 S317	563.cel
52	37	S315 S317	323.cel
53	56	S315 S317	566.cel
54	63	S315 S317	84.cel
55	68	S315 S317	ge197.cel
56	19	S317	159.cel
57	38	S317	328.cel
58	40	S317	345.cel
59	44	S317	390.cel
60	48	S317	458.cel
61	22		1854R.cel
62	53		547.cel
63	32		283.cel
64	36		300.cel
65	26	S316	236.cel
66	34	S316	288.cel
67	54	S316	558.cel
68	59	S316	65R.cel
69	65	S316	93.cel

Genes Names

1	10	205186_at	DNALI1 Chr:1p35.1
2	2	1554140_at	FLJ23129 Chr:1p31.3
3	39	230763_at	LOC128153 Chr:1q41
4	37	229816_at	FLJ23129 Chr:1p31.3
5	31	228100_at	LOC128344 Chr:1p13.2
6	26	223924_at	DKFZP434H0115 Chr:17q21.31
7	4	1554528_at	AAT1 Chr:3q12-q13.3
8	21	220302_at	MAK Chr:6q22
9	50	235946_at	FLJ32783 Chr:Xp11.23
10	30	227091_at	KIAA1505 Chr:7p12.3
11	41	231077_at	MGC20470 Chr:11p15.4
12	22	220390_at	FLJ23598 Chr:11p11.2
13	23	220591_s_at	FLJ22843 Chr:xp11.4
14	11	205406_s_at	SPA17 Chr:11q24.2
15	5	1557636_a_at	LOC136288 Chr:7p12.3
16	51	236222_at	AAT1 Chr:3q12-q13.3
17	46	231729_s_at	CAPS Chr:19p13.3
18	1	1553635_s_at	FLJ40873 Chr:1p31.3
19	15	208140_s_at	DKFZP586M1120 Chr:17p11.2
20	66	243087_at	NYD-SP29 Chr:1p22.3
21	12	205714_s_at	ZMYND10 Chr:3p21.3
22	48	233516_s_at	PF6 Chr:1p12
23	63	240857_at	DNAH9 Chr:17p12
24	54	236909_at	LOC129881 Chr:2q31.1
25	45	231549_at	MGC35194 Chr:1p36.21
26	53	236717_at	LOC165186 Chr:2p23.3
27	62	240065_at	FLJ25333 Chr:5q15
28	56	237281_at	AKAP28 Chr:xq25
29	42	231084_at	C10orf79 Chr:10q25.1
30	6	1558077_s_at	MDH1B Chr:2q34
31	34	229169_at	TTC18 Chr:10q22.3
32	67	243802_at	FLJ40427 Chr:3p21.2
33	19	220168_at	CASC1 Chr:12p12.1
34	61	239916_at	LOC146845 Chr:17p13.1
35	24	220636_at	DNAI2 Chr:17q25
36	64	241310_at	--- ---
37	55	237168_at	KIAA0266 Chr:13q12.2-q13.3
38	57	238116_at	DNCL2B Chr:16q23.3
39	60	239776_at	--- Chr:5q22.1
40	38	230093_at	TSGA2 Chr:21q22.3
41	20	220269_at	FLJ23049 Chr:3q26.2
42	13	206197_at	NME5 Chr:5q31
43	52	236325_at	--- ---
44	33	229012_at	C9orf24 Chr:9p13.2
45	27	224463_s_at	MGC13040 Chr:11q22.2
46	58	238327_at	ECGF1 Chr:22q13.33
47	65	241470_x_at	--- ---
48	49	235658_at	--- ---
49	8	202587_s_at	AK1 Chr:9q34.1
50	35	229170_s_at	TTC18 Chr:10q22.3
51	3	1554298_a_at	FLJ33620 Chr:3q26.2
52	17	218876_at	CGI-38 Chr:16q22.1
53	25	222890_at	HSPC065 Chr:16q13
54	18	219703_at	MNS1 Chr:15q21.2
55	28	226872_at	RFX2 Chr:19p13.3-p13.2
56	68	64900_at	CHST5 Chr:16q22.3
57	47	232984_at	HYDIN Chr:16q22.2
58	29	227081_at	DNALI1 Chr:1p35.1
59	43	231319_x_at	KIF9 Chr:3p21.31
60	16	210117_at	SPAG1 Chr:8q22.2
61	9	203397_s_at	GALNT3 Chr:2q24-q31
62	59	238584_at	FLJ22527 Chr:2q37.3
63	32	228450_at	LOC144100 Chr:11p15.2-p15.1
64	40	231068_at	FLJ31196 Chr:17p11.2
65	14	207624_s_at	RPGR Chr:xp11.4
66	36	229331_at	LOC132671 Chr:4q12
67	44	231380_at	VEST1 Chr:8q13
68	7	1558487_a_at	HNLF Chr:7p13

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	9
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 17:56:06

S4_using_G5

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=9)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC