S4_using_G4

Super-paramagnetic Clustering of 69 points in a 60 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=10)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	12	S307 S309 S310 S311	1437.cel
2	1	S307 S309 S310 S311	100R.cel
3	57	S307 S309 S310 S311	57.cel
4	9	S307 S309 S310 S311	1360.cel
5	17	S307 S309 S310 S311	155R.cel
6	29	S307 S309 S310 S311	254.cel
7	60	S307 S309 S310 S311	70.cel
8	10	S307 S309 S310 S311	1399.cel
9	34	S307 S309 S310 S311	288.cel
10	7	S307 S309 S310 S311	1308.cel
11	23	S307 S309 S310 S311	190.cel
12	13	S309 S310 S311	1453.cel
13	36	S309 S310 S311	300.cel
14	32	S309 S310 S311	283.cel
15	40	S309 S310 S311	345.cel
16	41	S309 S310 S311	349.cel
17	43	S309 S310 S311	360.cel
18	6	S309 S310 S311	129.cel
19	30	S309 S310 S311	269.cel
20	44	S310 S311	390.cel
21	4	S310 S311	12.cel
22	33	S310 S311	284.cel
23	69	S310 S311	ge205.cel
24	14	S310 S311	147.cel
25	58	S310 S311	574.cel
26	11	S308 S310 S311	1430.cel
27	15	S306 S308 S310 S311	1497R.cel
28	20	S306 S308 S310 S311	1621.cel
29	21	S306 S308 S310 S311	1622R.cel
30	22	S306 S308 S310 S311	1854R.cel
31	27	S306 S308 S310 S311	242.cel
32	66	S306 S308 S310 S311	94bis.cel
33	24	S306 S308 S310 S311	218.cel
34	42	S306 S308 S310 S311	356bis.cel
35	31	S306 S308 S310 S311	274.cel
36	25	S306 S308 S310 S311	222.cel
37	67	S306 S308 S310 S311	97.cel
38	37	S306 S308 S310 S311	323.cel
39	50	S306 S308 S310 S311	506.cel
40	51	S306 S308 S310 S311	527.cel
41	5	S306 S308 S310 S311	1284.cel
42	45	S306 S308 S310 S311	396.cel
43	56	S306 S308 S310 S311	566.cel
44	62	S306 S308 S310 S311	83.cel
45	28	S306 S308 S310 S311	246.cel
46	35	S306 S308 S310 S311	30.cel
47	19	S306 S308 S310 S311	159.cel
48	18	S306 S308 S310 S311	157.cel
49	39	S306 S308 S310 S311	344.cel
50	47	S306 S308 S310 S311	444.cel
51	48	S306 S308 S310 S311	458.cel
52	64	S306 S308 S310 S311	90.cel
53	8	S306 S308 S310 S311	1317.cel
54	26	S306 S308 S310 S311	236.cel
55	52	S306 S308 S310 S311	528bis.cel
56	53	S306 S308 S310 S311	547.cel
57	38	S306 S308 S310 S311	328.cel
58	54	S306 S308 S310 S311	558.cel
59	59	S306 S308 S310 S311	65R.cel
60	3	S306 S308 S310 S311	106.cel
61	68	S306 S308 S310 S311	ge197.cel
62	63	S306 S308 S310 S311	84.cel
63	55	S308 S310 S311	563.cel
64	2	S311	104.cel
65	49	S311	461.cel
66	46		428.cel
67	61		80.cel
68	16		15.cel
69	65		93.cel

Genes Names

1	34	218469_at	GREM1 Chr:15q13-q15
2	27	211890_x_at	CAPN3 Chr:15q15.1-q21.1
3	25	210944_s_at	CAPN3 Chr:15q15.1-q21.1
4	30	214475_x_at	CAPN3 Chr:15q15.1-q21.1
5	26	211836_s_at	MOG Chr:6p22-p21.3
6	44	228624_at	FLJ11155 Chr:4q32.1
7	13	204733_at	KLK6 Chr:19q13.3
8	36	219750_at	FLJ11155 Chr:4q32.1
9	32	217613_at	FLJ11155 Chr:4q32.1
10	33	218094_s_at	C20orf35 Chr:20q13.12
11	17	205989_s_at	MOG Chr:6p22-p21.3
12	41	223699_at	CNDP1 Chr:18q22.3
13	6	1562608_at	--- ---
14	42	225822_at	MGC17299 Chr:1p34.1
15	9	204073_s_at	C11orf9 Chr:11q12-q13.1
16	37	220026_at	CLCA4 Chr:1p31-p22
17	19	207323_s_at	MBP Chr:18q23
18	10	204378_at	BCAS1 Chr:20q13.2-q13.3
19	21	209072_at	MBP Chr:18q23
20	2	1555807_a_at	MOG Chr:6p22-p21.3
21	29	213371_at	LDB3 Chr:10q22.3-q23.2
22	24	210657_s_at	PNUTL2 Chr:17q22-q23
23	23	210193_at	MOBP Chr:3p21.33
24	28	212829_at	--- ---
25	7	1565809_x_at	--- Chr:1p36.33
26	54	238498_at	--- ---
27	31	214650_x_at	MOG Chr:6p22-p21.3
28	14	204777_s_at	MAL Chr:2cen-q13
29	46	229781_at	--- ---
30	45	228891_at	LOC349236 Chr:9q22.2
31	60	242765_at	MOBP Chr:3p21.33
32	22	210169_at	KIAA0420 Chr:16p13.3
33	47	231911_at	KIAA1189 Chr:2q24.2
34	20	207659_s_at	MOBP Chr:3p21.33
35	57	241717_at	LOC285281 Chr:3p21.33
36	53	238008_at	MGC35308 Chr:6q27
37	40	223572_at	KIAA1173 Chr:3p21.33
38	48	232388_at	CNTNAP4 Chr:16q23.1
39	1	1553765_a_at	KIAA1900 Chr:6q16.3
40	51	235794_at	MOBP Chr:3p21.33
41	38	221868_at	KIAA1155 Chr:2p13.2
42	4	1557943_at	CNP Chr:17q21
43	3	1557481_a_at	--- ---
44	59	242002_at	TCBA1 Chr:6q21
45	11	204547_at	RAB40B Chr:17q25.3
46	39	222862_s_at	AK5 Chr:1p31
47	49	235342_at	SPOCK3 Chr:4q32.3
48	16	205814_at	GRM3 Chr:7q21.1-q21.2
49	52	236420_s_at	TMEM16D Chr:12q23.3
50	55	239575_at	TMEM10 Chr:10q23-q24
51	58	241833_at	--- ---
52	15	205637_s_at	SH3GL3 Chr:15q24
53	56	240053_x_at	--- ---
54	5	1562473_at	--- ---
55	8	202890_at	MAP7 Chr:6q23.2
56	12	204681_s_at	RAPGEF5 Chr:7p15.3
57	35	219429_at	FA2H Chr:16q23
58	43	227006_at	PPP1R14A Chr:19q13.1
59	50	235476_at	TSBF1 Chr:3q26.1
60	18	207308_at	SLCO1A2 Chr:12p12

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	10
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 17:40:49

S4_using_G4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=10)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC