S4_using_G3

Super-paramagnetic Clustering of 69 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=12)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	12		1437.cel
2	6		129.cel
3	1		100R.cel
4	16		15.cel
5	7	S304	1308.cel
6	23	S304	190.cel
7	10	S304	1399.cel
8	30	S304	269.cel
9	40	S304	345.cel
10	57	S304	57.cel
11	32		283.cel
12	9	S303 S305	1360.cel
13	28	S301 S303 S305	246.cel
14	13	S301 S303 S305	1453.cel
15	3	S301 S303 S305	106.cel
16	2	S301 S303 S305	104.cel
17	21	S301 S303 S305	1622R.cel
18	8	S301 S303 S305	1317.cel
19	24	S301 S303 S305	218.cel
20	63	S301 S303 S305	84.cel
21	5	S301 S303 S305	1284.cel
22	22	S301 S303 S305	1854R.cel
23	42	S301 S303 S305	356bis.cel
24	26	S301 S303 S305	236.cel
25	60	S301 S303 S305	70.cel
26	27	S301 S303 S305	242.cel
27	15	S301 S303 S305	1497R.cel
28	38	S301 S303 S305	328.cel
29	39	S301 S303 S305	344.cel
30	64	S301 S303 S305	90.cel
31	17	S301 S303 S305	155R.cel
32	31	S301 S303 S305	274.cel
33	41	S301 S303 S305	349.cel
34	14	S301 S303 S305	147.cel
35	43	S301 S303 S305	360.cel
36	18	S301 S303 S305	157.cel
37	66	S301 S303 S305	94bis.cel
38	55	S301 S303 S305	563.cel
39	46	S301 S303 S305	428.cel
40	11	S301 S303 S305	1430.cel
41	19	S301 S303 S305	159.cel
42	62	S301 S303 S305	83.cel
43	29	S301 S303 S305	254.cel
44	59	S301 S303 S305	65R.cel
45	51	S301 S303 S305	527.cel
46	56	S301 S303 S305	566.cel
47	20	S301 S303 S305	1621.cel
48	25	S301 S303 S305	222.cel
49	35	S301 S303 S305	30.cel
50	45	S301 S303 S305	396.cel
51	47	S301 S303 S305	444.cel
52	48	S301 S303 S305	458.cel
53	67	S301 S303 S305	97.cel
54	37	S301 S303 S305	323.cel
55	49	S301 S303 S305	461.cel
56	50	S301 S303 S305	506.cel
57	53	S301 S303 S305	547.cel
58	68	S301 S303 S305	ge197.cel
59	52	S303 S305	528bis.cel
60	58	S303 S305	574.cel
61	65	S303 S305	93.cel
62	4	S305	12.cel
63	36	S302 S305	300.cel
64	34	S302 S305	288.cel
65	33	S302 S305	284.cel
66	44	S302 S305	390.cel
67	69	S302 S305	ge205.cel
68	54	S302 S305	558.cel
69	61	S305	80.cel

Genes Names

1	11	203798_s_at	VSNL1 Chr:2p24.3
2	50	228262_at	FLJ14503 Chr:xp22.13
3	22	206376_at	SLC6A15 Chr:12q21.3
4	49	227702_at	CYP4X1 Chr:1p33
5	23	206456_at	GABRA5 Chr:15q11.2-q12
6	67	243929_at	--- ---
7	39	219937_at	TRHDE Chr:12q15-q21
8	34	214945_at	NY-REN-7 Chr:5q35.3
9	7	1556366_s_at	FLJ33708 Chr:6p24.3
10	36	219425_at	SULT4A1 Chr:22q13.2-q13.31
11	3	1553864_at	DKFZp761H2121 Chr:10q26.13
12	24	206678_at	GABRA1 Chr:5q34-q35
13	57	233002_at	KIAA1622 Chr:14q32.2
14	53	230137_at	FLJ30834 Chr:4q27
15	40	220030_at	STYK1 Chr:12p13.31
16	25	206780_at	GAD2 Chr:10p11.23
17	6	1556351_at	HCN1 Chr:5p12
18	4	1556095_at	UNC13C Chr:15q21.1
19	14	204081_at	NRGN Chr:11q24
20	30	213921_at	SST Chr:3q28
21	17	205113_at	NEF3 Chr:8p21
22	15	204229_at	SLC17A7 Chr:19q13
23	66	242404_at	--- ---
24	1	1552714_at	CREG2 Chr:2q12.1
25	55	231489_x_at	--- ---
26	21	205827_at	CCK Chr:3p22-p21.3
27	68	244118_at	GABRA1 Chr:5q34-q35
28	2	1553422_s_at	A2BP1 Chr:16p13.3
29	8	1557122_s_at	--- ---
30	45	224650_at	MAL2 Chr:8q23
31	13	203999_at	SYT1 Chr:12cen-q21
32	29	210247_at	SYN2 Chr:3p25
33	56	232426_at	--- ---
34	69	52837_at	KIAA1644 Chr:22q13
35	41	220359_s_at	ARPP-21 Chr:3p22.1
36	42	221217_s_at	A2BP1 Chr:16p13.3
37	12	203998_s_at	SYT1 Chr:12cen-q21
38	28	210227_at	DLGAP2 Chr:8p23
39	5	1556096_s_at	UNC13C Chr:15q21.1
40	54	230551_at	--- ---
41	59	237384_x_at	--- ---
42	58	236456_at	PTPN5 Chr:11p15.1
43	65	241807_x_at	--- ---
44	19	205635_at	HAPIP Chr:3q21.2
45	31	214044_at	RYR2 Chr:1q42.1-q43
46	9	1568612_at	GABRG2 Chr:5q31.1-q33.1
47	51	229039_at	SYN2 Chr:3p25
48	16	204546_at	KIAA0513 Chr:16q24.1
49	10	202507_s_at	SNAP25 Chr:20p12-p11.2
50	38	219671_at	HPCAL4 Chr:1p34.2
51	47	226086_at	SYT13 Chr:11p12-p11
52	18	205414_s_at	KIAA0672 Chr:17p12
53	37	219659_at	ATP8A2 Chr:13q12-13
54	27	210040_at	SLC12A5 Chr:20q13.12
55	63	241399_at	TAFA2 Chr:12q13.3-q14.1
56	46	225111_s_at	NAPB Chr:20p12.3-p11.21
57	62	239765_at	--- ---
58	48	227053_at	PACSIN1 Chr:6p21.3
59	35	214956_at	--- ---
60	60	239357_at	--- ---
61	32	214098_at	KIAA1107 Chr:1p22.1
62	33	214811_at	KIAA0318 Chr:12q24.33
63	44	224209_s_at	GDA Chr:9q21.11-21.33
64	20	205691_at	SYNGR3 Chr:16p13
65	26	209726_at	CA11 Chr:19q13.3
66	61	239579_at	ABHD7 Chr:1p22.1
67	43	224164_at	TPM3 Chr:1q21.2
68	52	229254_at	DKFZp761N1114 Chr:1q32.1
69	64	241672_at	LOC400120 Chr:13q13.2

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	12
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 17:25:55

S4_using_G3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=12)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC