S4_using_G28

Super-paramagnetic Clustering of 69 points in a 20 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Samples
  • Genes
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=9)

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Samples

    16 129.cel
    233 284.cel
    354 558.cel
    424 S477 S480218.cel
    514 S477 S480147.cel
    625 S477 S480222.cel
    75 S477 S4801284.cel
    88 S477 S4801317.cel
    936 S477 S480300.cel
    1019 S477 S480159.cel
    1138 S477 S480328.cel
    1228 S477 S480246.cel
    1345 S477 S480396.cel
    1410 S477 S4801399.cel
    1546 S477 S480428.cel
    1620 S477 S4801621.cel
    1715 S477 S4801497R.cel
    1855 S477 S480563.cel
    1962 S477 S48083.cel
    207 S477 S4801308.cel
    2121 S477 S4801622R.cel
    2237 S477 S480323.cel
    2359 S477 S48065R.cel
    2442 S477 S480356bis.cel
    2567 S477 S48097.cel
    2611 S4801430.cel
    2753 S480547.cel
    2869 S480ge205.cel
    2918 S480157.cel
    309 S475 S476 S4801360.cel
    3127 S475 S476 S480242.cel
    3223 S475 S476 S480190.cel
    3364 S475 S476 S48090.cel
    3429 S475 S476 S480254.cel
    3513 S475 S476 S4801453.cel
    3632 S475 S476 S480283.cel
    3726 S475 S476 S480236.cel
    3822 S475 S476 S4801854R.cel
    3940 S475 S476 S480345.cel
    4039 S475 S476 S480344.cel
    4134 S475 S476 S480288.cel
    4257 S475 S476 S48057.cel
    4361 S476 S48080.cel
    441 S476 S480100R.cel
    4516 S476 S48015.cel
    4644 S476 S480390.cel
    4717 S476 S480155R.cel
    4860 S476 S48070.cel
    4912 S476 S4801437.cel
    5052 S476 S480528bis.cel
    5166 S476 S48094bis.cel
    5250 S480506.cel
    5351 S480527.cel
    543 S480106.cel
    554 S48012.cel
    5641 S480349.cel
    5758 S480574.cel
    5843 S480360.cel
    592 S478 S480104.cel
    6030 S478 S480269.cel
    6156 S478 S480566.cel
    6268 S478 S480ge197.cel
    6335 S479 S48030.cel
    6431 S479 S480274.cel
    6547 S479 S480444.cel
    6648 S479 S480458.cel
    6749 S479 S480461.cel
    6863 84.cel
    6965 93.cel

    Genes Names

    12204121_atGADD45G Chr:9q22.1-q22.2
    214229400_atHOXD10 Chr:2q31.1
    318238847_at--- ---
    45206858_s_atHOXC6 Chr:12q13.3
    56209905_atHOXA9 Chr:7p15-p14
    69214651_s_atHOXA9 Chr:7p15-p14
    73204362_atSCAP2 Chr:7p21-p15
    810225639_atSCAP2 Chr:7p21-p15
    98213844_atHOXA5 Chr:7p15-p14
    107213150_atHOXA10 Chr:7p15-p14
    1111226582_at--- Chr:12q13.13
    1211557051_s_at--- ---
    1313228642_at--- ---
    1416235521_atHOXA3 Chr:7p15-p14
    1517235753_at--- ---
    1619239153_at--- Chr:12q13.13
    1712228564_atLOC375295 Chr:2q31.2
    184205522_atHOXD4 Chr:2q31.1
    1915231906_atHOXD8 Chr:2q31.1
    2020244521_at--- ---

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)9
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size1

    Created by SPC_HTML_REPORT on 13-Aug-2004 00:20:32