S4_using_G27

Super-paramagnetic Clustering of 69 points in a 79 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=10)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	2		104.cel
2	9		1360.cel
3	32		283.cel
4	36		300.cel
5	19	S471 S472	159.cel
6	8	S468 S471 S472	1317.cel
7	27	S467 S468 S471 S472	242.cel
8	4	S467 S468 S471 S472	12.cel
9	6	S467 S468 S471 S472	129.cel
10	16	S467 S468 S471 S472	15.cel
11	28	S467 S468 S471 S472	246.cel
12	29	S467 S468 S471 S472	254.cel
13	17	S467 S468 S471 S472	155R.cel
14	43	S467 S468 S471 S472	360.cel
15	63	S467 S468 S471 S472	84.cel
16	7	S467 S468 S471 S472	1308.cel
17	30	S467 S468 S471 S472	269.cel
18	5	S467 S468 S471 S472	1284.cel
19	24	S467 S468 S471 S472	218.cel
20	39	S467 S468 S471 S472	344.cel
21	25	S467 S468 S471 S472	222.cel
22	57	S467 S468 S471 S472	57.cel
23	60	S467 S468 S471 S472	70.cel
24	31	S467 S468 S471 S472	274.cel
25	18	S467 S468 S471 S472	157.cel
26	48	S467 S468 S471 S472	458.cel
27	64	S467 S468 S471 S472	90.cel
28	62	S467 S468 S471 S472	83.cel
29	66	S467 S468 S471 S472	94bis.cel
30	58	S467 S468 S471 S472	574.cel
31	52	S467 S468 S471 S472	528bis.cel
32	22	S467 S468 S471 S472	1854R.cel
33	53	S467 S468 S471 S472	547.cel
34	37	S467 S468 S471 S472	323.cel
35	56	S467 S468 S471 S472	566.cel
36	61	S467 S468 S471 S472	80.cel
37	68	S467 S468 S471 S472	ge197.cel
38	11	S467 S468 S471 S472	1430.cel
39	3	S467 S468 S471 S472	106.cel
40	10	S467 S468 S471 S472	1399.cel
41	14	S467 S468 S471 S472	147.cel
42	46	S467 S468 S471 S472	428.cel
43	33	S467 S468 S471 S472	284.cel
44	42	S467 S468 S471 S472	356bis.cel
45	45	S467 S468 S471 S472	396.cel
46	55	S467 S468 S471 S472	563.cel
47	67	S467 S468 S471 S472	97.cel
48	35	S467 S468 S471 S472	30.cel
49	38	S467 S468 S471 S472	328.cel
50	15	S467 S468 S471 S472	1497R.cel
51	50	S467 S468 S471 S472	506.cel
52	21	S467 S468 S471 S472	1622R.cel
53	41	S467 S468 S471 S472	349.cel
54	20	S472	1621.cel
55	40	S472	345.cel
56	44	S472	390.cel
57	13	S473 S474	1453.cel
58	23	S473 S474	190.cel
59	49	S473 S474	461.cel
60	1	S473 S474	100R.cel
61	51	S473 S474	527.cel
62	12	S473 S474	1437.cel
63	47	S473 S474	444.cel
64	69	S473 S474	ge205.cel
65	26	S469 S470 S474	236.cel
66	34	S469 S470 S474	288.cel
67	54	S469 S470 S474	558.cel
68	59	S469 S470 S474	65R.cel
69	65	S470 S474	93.cel

Genes Names

1	12	205186_at	DNALI1 Chr:1p35.1
2	2	1554140_at	FLJ23129 Chr:1p31.3
3	48	230763_at	LOC128153 Chr:1q41
4	46	229816_at	FLJ23129 Chr:1p31.3
5	40	228100_at	LOC128344 Chr:1p13.2
6	32	223924_at	DKFZP434H0115 Chr:17q21.31
7	4	1554528_at	AAT1 Chr:3q12-q13.3
8	26	220302_at	MAK Chr:6q22
9	59	235946_at	FLJ32783 Chr:Xp11.23
10	38	227091_at	KIAA1505 Chr:7p12.3
11	50	231077_at	MGC20470 Chr:11p15.4
12	27	220390_at	FLJ23598 Chr:11p11.2
13	28	220591_s_at	FLJ22843 Chr:xp11.4
14	13	205406_s_at	SPA17 Chr:11q24.2
15	5	1557636_a_at	LOC136288 Chr:7p12.3
16	60	236222_at	AAT1 Chr:3q12-q13.3
17	55	231729_s_at	CAPS Chr:19p13.3
18	1	1553635_s_at	FLJ40873 Chr:1p31.3
19	18	208140_s_at	DKFZP586M1120 Chr:17p11.2
20	76	243087_at	NYD-SP29 Chr:1p22.3
21	14	205714_s_at	ZMYND10 Chr:3p21.3
22	57	233516_s_at	PF6 Chr:1p12
23	73	240857_at	DNAH9 Chr:17p12
24	63	236909_at	LOC129881 Chr:2q31.1
25	54	231549_at	MGC35194 Chr:1p36.21
26	62	236717_at	LOC165186 Chr:2p23.3
27	72	240065_at	FLJ25333 Chr:5q15
28	66	237281_at	AKAP28 Chr:xq25
29	51	231084_at	C10orf79 Chr:10q25.1
30	6	1558077_s_at	MDH1B Chr:2q34
31	43	229169_at	TTC18 Chr:10q22.3
32	78	243802_at	FLJ40427 Chr:3p21.2
33	24	220168_at	CASC1 Chr:12p12.1
34	71	239916_at	LOC146845 Chr:17p13.1
35	29	220636_at	DNAI2 Chr:17q25
36	74	241310_at	--- ---
37	65	237168_at	KIAA0266 Chr:13q12.2-q13.3
38	67	238116_at	DNCL2B Chr:16q23.3
39	70	239776_at	--- Chr:5q22.1
40	47	230093_at	TSGA2 Chr:21q22.3
41	25	220269_at	FLJ23049 Chr:3q26.2
42	15	206197_at	NME5 Chr:5q31
43	61	236325_at	--- ---
44	42	229012_at	C9orf24 Chr:9p13.2
45	33	224463_s_at	MGC13040 Chr:11q22.2
46	68	238327_at	ECGF1 Chr:22q13.33
47	75	241470_x_at	--- ---
48	58	235658_at	--- ---
49	9	202587_s_at	AK1 Chr:9q34.1
50	44	229170_s_at	TTC18 Chr:10q22.3
51	3	1554298_a_at	FLJ33620 Chr:3q26.2
52	20	218876_at	CGI-38 Chr:16q22.1
53	30	222890_at	HSPC065 Chr:16q13
54	22	219703_at	MNS1 Chr:15q21.2
55	36	226872_at	RFX2 Chr:19p13.3-p13.2
56	79	64900_at	CHST5 Chr:16q22.3
57	56	232984_at	HYDIN Chr:16q22.2
58	37	227081_at	DNALI1 Chr:1p35.1
59	52	231319_x_at	KIF9 Chr:3p21.31
60	19	210117_at	SPAG1 Chr:8q22.2
61	10	203397_s_at	GALNT3 Chr:2q24-q31
62	69	238584_at	FLJ22527 Chr:2q37.3
63	41	228450_at	LOC144100 Chr:11p15.2-p15.1
64	49	231068_at	FLJ31196 Chr:17p11.2
65	16	207624_s_at	RPGR Chr:xp11.4
66	45	229331_at	LOC132671 Chr:4q12
67	53	231380_at	VEST1 Chr:8q13
68	7	1558487_a_at	HNLF Chr:7p13
69	23	219833_s_at	EFHC1 Chr:6p12.3
70	34	225656_at	EFHC1 Chr:6p12.3
71	39	227105_at	FLJ22490 Chr:8q13.1
72	64	236915_at	--- ---
73	21	219229_at	SLCO3A1 Chr:15q26
74	31	223642_at	ZIC2 Chr:13q32
75	8	1562921_at	--- Chr:22q13.2
76	17	207797_s_at	DKFZp761O0113 Chr:4q35.1
77	77	243198_at	LOC161577 Chr:15q21.2
78	11	204187_at	GMPR Chr:6p23
79	35	226558_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	10
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 00:03:37

S4_using_G27

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=10)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC