S4_using_G26

Super-paramagnetic Clustering of 69 points in a 91 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=2)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	16	S461 S466	15.cel
2	37	S461 S466	323.cel
3	59	S461 S466	65R.cel
4	32	S461 S466	283.cel
5	28	S466	246.cel
6	34	S466	288.cel
7	18	S460	157.cel
8	48	S460	458.cel
9	62	S460	83.cel
10	64	S460	90.cel
11	66		94bis.cel
12	26		236.cel
13	2		104.cel
14	11		1430.cel
15	19		159.cel
16	3	S465	106.cel
17	14	S465	147.cel
18	33	S465	284.cel
19	42	S465	356bis.cel
20	8	S465	1317.cel
21	5		1284.cel
22	30		269.cel
23	68		ge197.cel
24	39		344.cel
25	53		547.cel
26	15		1497R.cel
27	10		1399.cel
28	69		ge205.cel
29	38		328.cel
30	63		84.cel
31	56		566.cel
32	44		390.cel
33	1		100R.cel
34	60		70.cel
35	13		1453.cel
36	46		428.cel
37	45	S459 S463	396.cel
38	31	S459 S463	274.cel
39	43	S459 S463	360.cel
40	21	S459 S463	1622R.cel
41	24	S459 S463	218.cel
42	67	S463	97.cel
43	36	S463	300.cel
44	47		444.cel
45	57		57.cel
46	50		506.cel
47	17		155R.cel
48	4		12.cel
49	22		1854R.cel
50	58		574.cel
51	35		30.cel
52	6		129.cel
53	41		349.cel
54	29		254.cel
55	54		558.cel
56	55		563.cel
57	20		1621.cel
58	40		345.cel
59	52		528bis.cel
60	49	S462	461.cel
61	51	S462	527.cel
62	25	S462	222.cel
63	23	S462	190.cel
64	27		242.cel
65	9	S464	1360.cel
66	7	S464	1308.cel
67	61	S464	80.cel
68	65	S464	93.cel
69	12		1437.cel

Genes Names

1	29	204825_at	MELK Chr:9p13.1
2	21	204162_at	KNTC2 Chr:18p11.31
3	5	202503_s_at	KIAA0101 Chr:15q22.1
4	43	209773_s_at	RRM2 Chr:2p25-p24
5	3	201890_at	RRM2 Chr:2p25-p24
6	52	218039_at	NUSAP1 Chr:15q14
7	70	222848_at	FKSG14 Chr:5p15.2-q12.3
8	55	218662_s_at	HCAP-G Chr:4p16-p15
9	15	203755_at	BUB1B Chr:15q15
10	49	214710_s_at	CCNB1 Chr:5q12
11	18	204026_s_at	ZWINT Chr:10q21-q22
12	10	203213_at	CDC2 Chr:10q21.1
13	24	204244_s_at	ASK Chr:7q21.3
14	39	208079_s_at	STK6 Chr:20q13.2-q13.3
15	2	201292_at	TOP2A Chr:17q21-q22
16	44	210052_s_at	TPX2 Chr:20q11.2
17	1	201291_s_at	TOP2A Chr:17q21-q22
18	8	202705_at	CCNB2 Chr:15q21.3
19	57	218755_at	KIF20A Chr:5q31
20	11	203358_s_at	EZH2 Chr:7q35-q36
21	16	203764_at	DLG7 Chr:14q22.2
22	60	219148_at	TOPK Chr:8p21.2
23	9	202870_s_at	CDC20 Chr:1p34.1
24	80	228273_at	FLJ11029 Chr:17q23.2
25	56	218663_at	HCAP-G Chr:4p16-p15
26	62	219787_s_at	ECT2 Chr:3q26.1-q26.2
27	82	228729_at	CCNB1 Chr:5q12
28	13	203554_x_at	PTTG1 Chr:5q35.1
29	20	204146_at	PIR51 Chr:12p13.2-p13.1
30	53	218355_at	KIF4A Chr:xq13.1
31	30	204962_s_at	CENPA Chr:2p24-p21
32	59	218883_s_at	KLIP1 Chr:4q35.1
33	51	218009_s_at	PRC1 Chr:15q26.1
34	45	210559_s_at	CDC2 Chr:10q21.1
35	38	207828_s_at	CENPF Chr:1q32-q41
36	42	209642_at	BUB1 Chr:2q14
37	68	222740_at	ATAD2 Chr:8q24.13
38	72	223381_at	CDCA1 Chr:1q23.2
39	61	219306_at	KNSL7 Chr:3p21.32
40	47	213226_at	PMSCL1 Chr:4q27
41	63	219918_s_at	ASPM Chr:1q31
42	86	230165_at	SGOL2 Chr:2q33.2
43	25	204444_at	KIF11 Chr:10q24.1
44	32	205046_at	CENPE Chr:4q24-q25
45	12	203362_s_at	MAD2L1 Chr:4q27
46	46	213007_at	FLJ10719 Chr:15q25-q26
47	89	236641_at	KIF14 Chr:1pter-q31.3
48	28	204822_at	TTK Chr:6q13-q21
49	41	209172_s_at	CENPF Chr:1q32-q41
50	81	228323_at	AF15Q14 Chr:15q14
51	76	226980_at	XTP1 Chr:5q12.1
52	66	222077_s_at	RACGAP1 Chr:12q13.12
53	54	218585_s_at	RAMP Chr:1q32.1-q32.2
54	67	222680_s_at	RAMP Chr:1q32.1-q32.2
55	27	204641_at	NEK2 Chr:1q32.2-q41
56	90	238756_at	LOC283431 Chr:12q23.3
57	73	224428_s_at	CDCA7 Chr:2q31
58	7	202589_at	TYMS Chr:18p11.32
59	71	223229_at	HSPC150 Chr:1q32.1
60	6	202580_x_at	FOXM1 Chr:12p13
61	22	204170_s_at	CKS2 Chr:9q22
62	58	218875_s_at	FBXO5 Chr:6q25-q26
63	65	222039_at	LOC146909 Chr:17q21.31
64	74	225834_at	MGC57827 ---
65	77	227249_at	NDE1 Chr:16p13.11
66	91	242560_at	FANCD2 Chr:3p26
67	35	206102_at	KIAA0186 Chr:20p11.21
68	19	204033_at	TRIP13 Chr:5p15.33
69	40	208808_s_at	HMGB2 Chr:4q31
70	79	228033_at	E2F7 Chr:12q21.1
71	37	207165_at	HMMR Chr:5q33.2-qter
72	84	229490_s_at	IQGAP3 Chr:1q23.1
73	88	235425_at	SGOL2 Chr:2q33.2
74	50	216237_s_at	MCM5 Chr:22q13.1
75	14	203560_at	GGH Chr:8q12.2
76	23	204240_s_at	SMC2L1 Chr:9q31.2
77	36	206632_s_at	APOBEC3B Chr:22q13.1-q13.2
78	64	220239_at	KLHL7 Chr:7p15.3
79	48	213906_at	MYBL1 Chr:8q22
80	26	204510_at	CDC7 Chr:1p22
81	78	227350_at	--- ---
82	34	205967_at	HIST1H4C Chr:6p21.3
83	33	205394_at	CHEK1 Chr:11q24-q24
84	83	229305_at	KLIP1 Chr:4q35.1
85	4	202107_s_at	MCM2 Chr:3q21
86	17	204023_at	RFC4 Chr:3q27
87	69	222843_at	FIGNL1 Chr:7p12.2
88	31	205034_at	CCNE2 Chr:8q22.1
89	85	229551_x_at	ZNF367 Chr:9q22
90	87	232315_at	LOC400713 Chr:19q13.41
91	75	226319_s_at	THOC4 Chr:17q25.3

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	2
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 23:46:17

S4_using_G26

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=2)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC