S4_using_G25

Super-paramagnetic Clustering of 69 points in a 18 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=5)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	40		345.cel
2	1		100R.cel
3	18		157.cel
4	44		390.cel
5	21	S453 S457 S458	1622R.cel
6	20	S453 S457 S458	1621.cel
7	47	S453 S457 S458	444.cel
8	51	S453 S457 S458	527.cel
9	27	S453 S457 S458	242.cel
10	30	S449 S457 S458	269.cel
11	14	S449 S457 S458	147.cel
12	69	S446 S449 S457 S458	ge205.cel
13	12	S446 S449 S457 S458	1437.cel
14	42	S446 S449 S457 S458	356bis.cel
15	35	S446 S449 S457 S458	30.cel
16	19	S457 S458	159.cel
17	24	S457 S458	218.cel
18	45	S457 S458	396.cel
19	67	S457 S458	97.cel
20	33	S456 S458	284.cel
21	16	S456 S458	15.cel
22	61	S456 S458	80.cel
23	7	S456 S458	1308.cel
24	55	S458	563.cel
25	4	S458	12.cel
26	9	S458	1360.cel
27	62	S451 S455 S458	83.cel
28	43	S451 S455 S458	360.cel
29	2	S447 S451 S455 S458	104.cel
30	10	S447 S451 S455 S458	1399.cel
31	57	S447 S451 S455 S458	57.cel
32	17	S447 S451 S455 S458	155R.cel
33	68	S447 S451 S455 S458	ge197.cel
34	8	S451 S455 S458	1317.cel
35	60	S451 S455 S458	70.cel
36	3	S455 S458	106.cel
37	29	S455 S458	254.cel
38	39	S452 S454 S455 S458	344.cel
39	6	S452 S454 S455 S458	129.cel
40	28	S452 S454 S455 S458	246.cel
41	52	S448 S452 S454 S455 S458	528bis.cel
42	26	S448 S452 S454 S455 S458	236.cel
43	13	S448 S452 S454 S455 S458	1453.cel
44	32	S448 S452 S454 S455 S458	283.cel
45	49	S448 S452 S454 S455 S458	461.cel
46	54	S454 S455 S458	558.cel
47	58	S458	574.cel
48	65	S458	93.cel
49	56	S458	566.cel
50	53	S458	547.cel
51	5	S458	1284.cel
52	64	S458	90.cel
53	25	S458	222.cel
54	37	S458	323.cel
55	63	S458	84.cel
56	38	S458	328.cel
57	22	S458	1854R.cel
58	11	S458	1430.cel
59	36	S458	300.cel
60	15	S450 S458	1497R.cel
61	48	S450 S458	458.cel
62	23	S450 S458	190.cel
63	66	S450 S458	94bis.cel
64	31	S450 S458	274.cel
65	34	S450 S458	288.cel
66	50	S450 S458	506.cel
67	59	S450 S458	65R.cel
68	46	S458	428.cel
69	41	S458	349.cel

Genes Names

1	5	209692_at	EYA2 Chr:20q13.1
2	2	201984_s_at	EGFR Chr:7p12
3	4	203484_at	SEC61G Chr:7p11.2
4	8	228307_at	EMILIN3 Chr:20q11.2-q12
5	9	232120_at	--- ---
6	14	232925_at	--- ---
7	16	233025_at	PDZK3 Chr:5p13.3
8	18	243327_at	--- ---
9	1	201983_s_at	EGFR Chr:7p12
10	7	224999_at	--- ---
11	10	232224_at	MASP1 Chr:3q27-q28
12	6	210135_s_at	SHOX2 Chr:3q25-q26.1
13	12	232541_at	--- ---
14	17	233044_at	--- ---
15	15	232935_at	--- ---
16	13	232882_at	--- ---
17	3	203373_at	SOCS2 Chr:12q
18	11	232539_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	5
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 23:30:10

S4_using_G25

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=5)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC