S4_using_G24

Super-paramagnetic Clustering of 69 points in a 134 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=17)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	17	S443 S445	155R.cel
2	18	S443 S445	157.cel
3	2	S443 S445	104.cel
4	24	S443 S445	218.cel
5	27	S443 S445	242.cel
6	4	S443 S445	12.cel
7	10	S443 S445	1399.cel
8	13	S443 S445	1453.cel
9	57	S443 S445	57.cel
10	3	S443 S445	106.cel
11	5	S443 S445	1284.cel
12	11	S443 S445	1430.cel
13	49	S443 S445	461.cel
14	20	S443 S445	1621.cel
15	53	S443 S445	547.cel
16	14	S443 S445	147.cel
17	66	S443 S445	94bis.cel
18	21	S443 S445	1622R.cel
19	28	S443 S445	246.cel
20	50	S443 S445	506.cel
21	36	S443 S445	300.cel
22	64	S443 S445	90.cel
23	30	S443 S445	269.cel
24	8	S443 S445	1317.cel
25	9	S443 S445	1360.cel
26	12	S443 S445	1437.cel
27	15	S443 S445	1497R.cel
28	22	S443 S445	1854R.cel
29	19	S443 S445	159.cel
30	31	S443 S445	274.cel
31	35	S443 S445	30.cel
32	47	S443 S445	444.cel
33	44	S443 S445	390.cel
34	54	S443 S445	558.cel
35	65	S443 S445	93.cel
36	1	S443 S445	100R.cel
37	6	S443 S445	129.cel
38	32	S443 S445	283.cel
39	25	S443 S445	222.cel
40	7	S443 S445	1308.cel
41	38	S443 S445	328.cel
42	16	S443 S445	15.cel
43	40	S443 S445	345.cel
44	33	S443 S445	284.cel
45	55	S443 S445	563.cel
46	58	S443 S445	574.cel
47	62	S443 S445	83.cel
48	41	S443 S445	349.cel
49	48	S443 S445	458.cel
50	51	S443 S445	527.cel
51	61	S443 S445	80.cel
52	42	S443 S445	356bis.cel
53	45	S443 S445	396.cel
54	67	S443 S445	97.cel
55	23	S443 S445	190.cel
56	69	S443 S445	ge205.cel
57	43	S443 S445	360.cel
58	39	S443 S445	344.cel
59	46	S443 S445	428.cel
60	56	S443 S445	566.cel
61	26	S443 S445	236.cel
62	52	S443 S445	528bis.cel
63	59	S443 S445	65R.cel
64	60	S443 S445	70.cel
65	37	S445	323.cel
66	29	S444	254.cel
67	34	S444	288.cel
68	63	S444	84.cel
69	68	S444	ge197.cel

Genes Names

1	93	218854_at	SART2 Chr:6q22
2	28	203561_at	FCGR2A Chr:1q23
3	88	217388_s_at	KYNU Chr:2q22.3
4	14	201743_at	CD14 Chr:5q31.1
5	69	211429_s_at	--- ---
6	10	201422_at	IFI30 Chr:19p13.1
7	56	206584_at	LY96 Chr:8q13.3
8	46	204971_at	CSTA Chr:3q21
9	95	219607_s_at	MS4A4A Chr:11q12
10	15	202546_at	VAMP8 Chr:2p12-p11.2
11	106	223280_x_at	MS4A6A Chr:11q12.1
12	110	224356_x_at	MS4A6A Chr:11q12.1
13	17	202833_s_at	SERPINA1 Chr:14q32.1
14	35	204174_at	ALOX5AP Chr:13q12
15	127	230550_at	MS4A6A Chr:11q12.1
16	94	219386_s_at	SLAMF8 Chr:1q23.1
17	11	201487_at	CTSC Chr:11q14.1-q14.3
18	96	219666_at	MS4A6A Chr:11q12.1
19	36	204232_at	FCER1G Chr:1q23
20	66	210176_at	TLR1 Chr:4p14
21	83	214770_at	MSR1 Chr:8p22
22	6	1554899_s_at	FCER1G Chr:1q23
23	16	202803_s_at	ITGB2 Chr:21q22.3
24	8	1555728_a_at	MS4A4A Chr:11q12
25	21	202953_at	C1QB Chr:1p36.3-p34.1
26	92	218232_at	C1QA Chr:1p36.3-p34.1
27	80	213566_at	RNASE6 Chr:14q11.2
28	111	225353_s_at	C1QG Chr:1p36.11
29	76	212588_at	PTPRC Chr:1q31-q32
30	7	1555349_a_at	ITGB2 Chr:21q22.3
31	45	204959_at	MNDA Chr:1q22
32	32	204007_at	FCGR3A Chr:1q23
33	13	201721_s_at	LAPTM5 Chr:1p34
34	43	204787_at	Z39IG Chr:xq12-q13.3
35	33	204122_at	TYROBP Chr:19q13.1
36	18	202901_x_at	CTSS Chr:1q21
37	54	206111_at	RNASE2 Chr:14q24-q31
38	120	228532_at	MGC24133 Chr:1p13.2
39	81	214467_at	GPR65 Chr:14q31-q32.1
40	31	204006_s_at	FCGR3A Chr:1q23
41	1	1552316_a_at	IMAP1 Chr:7q36.1
42	58	208018_s_at	HCK Chr:20q11-q12
43	129	232617_at	CTSS Chr:1q21
44	22	202957_at	HCLS1 Chr:3q13
45	19	202902_s_at	CTSS Chr:1q21
46	40	204446_s_at	ALOX5 Chr:10q11.2
47	122	229560_at	TLR8 Chr:xp22
48	50	205786_s_at	ITGAM Chr:16p11.2
49	100	220330_s_at	SAMSN1 Chr:21q11
50	117	227266_s_at	FYB Chr:5p13.1
51	105	221698_s_at	CLECSF12 Chr:12p13.2-p12.3
52	26	203416_at	CD53 Chr:1p13
53	124	229937_x_at	LILRB1 Chr:19q13.4
54	87	216950_s_at	FCGR1A Chr:1q21.2-q21.3
55	67	210314_x_at	TNFSF13 Chr:17p13.1
56	5	1552807_a_at	SIGLEC10 Chr:19q13.3
57	115	226068_at	SYK Chr:9q22
58	112	225502_at	DOCK8 Chr:9p24.3
59	91	217983_s_at	RNASET2 Chr:6q27
60	23	203104_at	CSF1R Chr:5q33-q35
61	130	232843_s_at	DOCK8 Chr:9p24.3
62	82	214511_x_at	FCGR1A Chr:1q21.2-q21.3
63	118	227346_at	ZNFN1A1 Chr:7p13-p11.1
64	89	217478_s_at	HLA-DMA Chr:6p21.3
65	63	209312_x_at	HLA-DRB1 Chr:6p21.3
66	68	210982_s_at	HLA-DRA Chr:6p21.3
67	85	215193_x_at	HLA-DRB3 Chr:6p21.3
68	60	208306_x_at	HLA-DRB3 Chr:6p21.3
69	61	208894_at	HLA-DRA Chr:6p21.3
70	42	204670_x_at	HLA-DRB3 Chr:6p21.3
71	64	209619_at	CD74 Chr:5q32
72	78	212998_x_at	HLA-DQB1 Chr:6p21.3
73	70	211654_x_at	HLA-DQB1 Chr:6p21.3
74	74	211991_s_at	HLA-DPA1 Chr:6p21.3
75	107	223343_at	MS4A7 Chr:11q12
76	9	201137_s_at	HLA-DPB1 Chr:6p21.3
77	71	211656_x_at	HLA-DQB1 Chr:6p21.3
78	65	209823_x_at	HLA-DQB1 Chr:6p21.3
79	4	1552386_at	FLJ33641 Chr:5q12.1
80	79	213537_at	HLA-DPA1 Chr:6p21.3
81	77	212671_s_at	HLA-DQA1 Chr:6p21.3
82	116	227265_at	--- ---
83	73	211990_at	HLA-DPA1 Chr:6p21.3
84	126	230391_at	--- ---
85	99	220146_at	TLR7 Chr:xp22.3
86	53	205997_at	ADAM28 Chr:8p21.2
87	108	223620_at	GPR34 Chr:xp11.4-p11.3
88	72	211742_s_at	EVI2B Chr:17q11.2
89	123	229723_at	TAGAP Chr:6q25.3
90	34	204150_at	STAB1 Chr:3p21.31
91	134	38487_at	STAB1 Chr:3p21.31
92	125	230252_at	GPR92 Chr:12p13.31
93	55	206420_at	IGSF6 Chr:16p12-p13
94	128	230925_at	APBB1IP Chr:10p12.2
95	29	203645_s_at	CD163 Chr:12p13.3
96	84	215049_x_at	CD163 Chr:12p13.3
97	103	221210_s_at	NPL Chr:1q25
98	25	203305_at	F13A1 Chr:6p25.3-p24.3
99	113	225646_at	CTSC Chr:11q14.1-q14.3
100	114	225647_s_at	CTSC Chr:11q14.1-q14.3
101	2	1552365_at	SCIN Chr:7p21.3
102	38	204430_s_at	SLC2A5 Chr:1p36.2
103	57	207655_s_at	BLNK Chr:10q23.2-q23.33
104	86	216233_at	CD163 Chr:12p13.3
105	3	1552367_a_at	SCIN Chr:7p21.3
106	44	204834_at	FGL2 Chr:7q11.23
107	90	217767_at	C3 Chr:19p13.3-p13.2
108	102	220532_s_at	LR8 Chr:7q36.1
109	20	202917_s_at	S100A8 Chr:1q21
110	27	203535_at	S100A9 Chr:1q21
111	101	220491_at	HAMP Chr:19q13.1
112	48	205119_s_at	FPR1 Chr:19q13.4
113	109	223660_at	AD026 Chr:1p13.2
114	75	212543_at	AIM1 Chr:6q21
115	98	220005_at	GPR86 Chr:3q24
116	52	205898_at	CX3CR1 Chr:3p21.3
117	119	227889_at	CAPNS2 Chr:16q13
118	37	204416_x_at	APOC1 Chr:19q13.2
119	51	205890_s_at	UBD Chr:6p21.3
120	59	208146_s_at	CPVL Chr:7p15-p14
121	30	203665_at	HMOX1 Chr:22q13.1
122	132	236028_at	IBSP Chr:4q21-q25
123	133	244434_at	--- ---
124	41	204563_at	SELL Chr:1q23-q25
125	39	204438_at	MRC1 Chr:10p13
126	97	219890_at	CLECSF5 Chr:7q33
127	131	234987_at	--- Chr:20q11.23
128	47	205027_s_at	MAP3K8 Chr:10p12.1
129	62	208944_at	TGFBR2 Chr:3p22
130	12	201631_s_at	IER3 Chr:6p21.3
131	49	205681_at	BCL2A1 Chr:15q24.3
132	24	203290_at	HLA-DQA1 Chr:6p21.3
133	104	221491_x_at	HLA-DRB3 Chr:6p21.3
134	121	229074_at	EHD4 Chr:15q11.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	17
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 23:09:37

S4_using_G24

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=17)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC