S4_using_G23

Super-paramagnetic Clustering of 69 points in a 110 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=14)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	12	S440 S442	1437.cel
2	3	S440 S442	106.cel
3	11	S440 S442	1430.cel
4	9	S440 S442	1360.cel
5	7	S440 S442	1308.cel
6	10	S440 S442	1399.cel
7	23	S440 S442	190.cel
8	1	S440 S442	100R.cel
9	57	S440 S442	57.cel
10	29	S440 S442	254.cel
11	17	S440 S442	155R.cel
12	34	S440 S442	288.cel
13	60	S440 S442	70.cel
14	33	S440 S442	284.cel
15	13	S440 S442	1453.cel
16	36	S440 S442	300.cel
17	6	S440 S442	129.cel
18	32	S440 S442	283.cel
19	30	S440 S442	269.cel
20	40	S440 S442	345.cel
21	41	S440 S442	349.cel
22	43	S440 S442	360.cel
23	62	S440 S442	83.cel
24	44	S440 S442	390.cel
25	4	S440 S442	12.cel
26	58	S440 S442	574.cel
27	69	S440 S442	ge205.cel
28	52	S440 S442	528bis.cel
29	54	S440 S442	558.cel
30	14	S440 S442	147.cel
31	8	S439 S440 S442	1317.cel
32	19	S438 S439 S440 S442	159.cel
33	20	S438 S439 S440 S442	1621.cel
34	21	S438 S439 S440 S442	1622R.cel
35	51	S438 S439 S440 S442	527.cel
36	28	S438 S439 S440 S442	246.cel
37	24	S438 S439 S440 S442	218.cel
38	26	S438 S439 S440 S442	236.cel
39	37	S438 S439 S440 S442	323.cel
40	39	S438 S439 S440 S442	344.cel
41	59	S438 S439 S440 S442	65R.cel
42	15	S438 S439 S440 S442	1497R.cel
43	22	S438 S439 S440 S442	1854R.cel
44	42	S438 S439 S440 S442	356bis.cel
45	66	S438 S439 S440 S442	94bis.cel
46	5	S438 S439 S440 S442	1284.cel
47	56	S438 S439 S440 S442	566.cel
48	63	S438 S439 S440 S442	84.cel
49	31	S438 S439 S440 S442	274.cel
50	68	S438 S439 S440 S442	ge197.cel
51	27	S438 S439 S440 S442	242.cel
52	18	S438 S439 S440 S442	157.cel
53	38	S438 S439 S440 S442	328.cel
54	47	S438 S439 S440 S442	444.cel
55	50	S438 S439 S440 S442	506.cel
56	48	S438 S439 S440 S442	458.cel
57	64	S438 S439 S440 S442	90.cel
58	35	S438 S439 S440 S442	30.cel
59	45	S438 S439 S440 S442	396.cel
60	25	S438 S439 S440 S442	222.cel
61	67	S438 S439 S440 S442	97.cel
62	53	S438 S439 S440 S442	547.cel
63	55	S439 S440 S442	563.cel
64	2	S442	104.cel
65	49	S442	461.cel
66	46	S441	428.cel
67	61	S441	80.cel
68	16	S441	15.cel
69	65	S441	93.cel

Genes Names

1	55	218469_at	GREM1 Chr:15q13-q15
2	41	211890_x_at	CAPN3 Chr:15q15.1-q21.1
3	39	210944_s_at	CAPN3 Chr:15q15.1-q21.1
4	49	214475_x_at	CAPN3 Chr:15q15.1-q21.1
5	40	211836_s_at	MOG Chr:6p22-p21.3
6	76	228624_at	FLJ11155 Chr:4q32.1
7	21	204733_at	KLK6 Chr:19q13.3
8	59	219750_at	FLJ11155 Chr:4q32.1
9	53	217613_at	FLJ11155 Chr:4q32.1
10	54	218094_s_at	C20orf35 Chr:20q13.12
11	25	205989_s_at	MOG Chr:6p22-p21.3
12	64	223699_at	CNDP1 Chr:18q22.3
13	8	1562608_at	--- ---
14	69	225822_at	MGC17299 Chr:1p34.1
15	13	204073_s_at	C11orf9 Chr:11q12-q13.1
16	60	220026_at	CLCA4 Chr:1p31-p22
17	29	207323_s_at	MBP Chr:18q23
18	14	204378_at	BCAS1 Chr:20q13.2-q13.3
19	33	209072_at	MBP Chr:18q23
20	4	1555807_a_at	MOG Chr:6p22-p21.3
21	46	213371_at	LDB3 Chr:10q22.3-q23.2
22	38	210657_s_at	PNUTL2 Chr:17q22-q23
23	37	210193_at	MOBP Chr:3p21.33
24	44	212829_at	--- ---
25	9	1565809_x_at	--- Chr:1p36.33
26	97	238498_at	--- ---
27	50	214650_x_at	MOG Chr:6p22-p21.3
28	22	204777_s_at	MAL Chr:2cen-q13
29	81	229781_at	--- ---
30	77	228891_at	LOC349236 Chr:9q22.2
31	107	242765_at	MOBP Chr:3p21.33
32	36	210169_at	KIAA0420 Chr:16p13.3
33	86	231911_at	KIAA1189 Chr:2q24.2
34	30	207659_s_at	MOBP Chr:3p21.33
35	103	241717_at	LOC285281 Chr:3p21.33
36	96	238008_at	MGC35308 Chr:6q27
37	63	223572_at	KIAA1173 Chr:3p21.33
38	87	232388_at	CNTNAP4 Chr:16q23.1
39	1	1553765_a_at	KIAA1900 Chr:6q16.3
40	92	235794_at	MOBP Chr:3p21.33
41	61	221868_at	KIAA1155 Chr:2p13.2
42	6	1557943_at	CNP Chr:17q21
43	5	1557481_a_at	--- ---
44	106	242002_at	TCBA1 Chr:6q21
45	17	204547_at	RAB40B Chr:17q25.3
46	62	222862_s_at	AK5 Chr:1p31
47	90	235342_at	SPOCK3 Chr:4q32.3
48	24	205814_at	GRM3 Chr:7q21.1-q21.2
49	93	236420_s_at	TMEM16D Chr:12q23.3
50	99	239575_at	TMEM10 Chr:10q23-q24
51	104	241833_at	--- ---
52	23	205637_s_at	SH3GL3 Chr:15q24
53	100	240053_x_at	--- ---
54	7	1562473_at	--- ---
55	10	202890_at	MAP7 Chr:6q23.2
56	20	204681_s_at	RAPGEF5 Chr:7p15.3
57	58	219429_at	FA2H Chr:16q23
58	71	227006_at	PPP1R14A Chr:19q13.1
59	91	235476_at	TSBF1 Chr:3q26.1
60	28	207308_at	SLCO1A2 Chr:12p12
61	43	212750_at	PPP1R16B Chr:20q12
62	57	219305_x_at	FBXO2 Chr:1p36.21
63	109	41577_at	PPP1R16B Chr:20q12
64	108	244113_at	--- ---
65	51	214769_at	CLCN4 Chr:Xp22.3
66	56	218651_s_at	FLJ11196 Chr:15q22.32
67	65	224482_s_at	RAB11-FIP4 Chr:17q11.2
68	105	241873_at	UNC5C Chr:4q21-q23
69	70	226018_at	Ells1 Chr:7p15.1
70	73	227440_at	EB-1 Chr:12q23.1-q23.2
71	83	230104_s_at	p25 Chr:5p15.3
72	101	240292_x_at	EB-1 Chr:12q23.1-q23.2
73	72	227439_at	EB-1 Chr:12q23.1-q23.2
74	74	227441_s_at	EB-1 Chr:12q23.1-q23.2
75	88	234261_at	--- ---
76	95	236838_at	--- ---
77	15	204467_s_at	SNCA Chr:4q21
78	68	225727_at	PLEKHH1 Chr:14q24.1
79	89	235236_at	--- ---
80	48	213839_at	KIAA0500 Chr:14q32.2
81	16	204519_s_at	TM4SF11 Chr:16q13
82	26	206385_s_at	ANK3 Chr:10q21
83	34	209442_x_at	ANK3 Chr:10q21
84	52	215314_at	ANK3 Chr:10q21
85	32	208912_s_at	CNP Chr:17q21
86	67	225726_s_at	PLEKHH1 Chr:14q24.1
87	80	229713_at	--- ---
88	94	236565_s_at	FLJ11196 Chr:15q22.32
89	2	1553796_at	FLJ30594 Chr:2p25.3
90	3	1553797_a_at	FLJ30594 Chr:2p25.3
91	45	213106_at	ATP8A1 Chr:4p14-p12
92	85	231484_at	ATP8A1 Chr:4p14-p12
93	11	203151_at	MAP1A Chr:15q13-qter
94	18	204678_s_at	KCNK1 Chr:1q42-q43
95	35	209791_at	PADI2 Chr:1p35.2-p35.1
96	42	212339_at	EPB41L1 Chr:20q11.2-q12
97	12	203619_s_at	FAIM2 Chr:12q13
98	66	225325_at	FLJ20160 Chr:2q32.3
99	82	229958_at	--- Chr:8p23.3
100	84	230783_at	LOC283713 Chr:15q13.1
101	102	240512_x_at	KCTD4 Chr:13q14.11
102	27	206448_at	ZNF365 Chr:10q21.2
103	47	213385_at	CHN2 Chr:7p15.3
104	78	228973_at	FLJ37266 Chr:11q14.1
105	79	229110_at	--- ---
106	31	208358_s_at	UGT8 Chr:4q26
107	75	228010_at	PPP2R2C Chr:4p16.1
108	98	238600_at	MARLIN1 Chr:4p16.2
109	19	204679_at	KCNK1 Chr:1q42-q43
110	110	43511_s_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	14
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 22:54:22

S4_using_G23

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=14)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC