S4_using_G20

Super-paramagnetic Clustering of 69 points in a 24 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Samples

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=6)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	27				242.cel
2	67				97.cel
3	29				254.cel
4	28				246.cel
5	59				65R.cel
6	12	S429			1437.cel
7	4	S429			12.cel
8	33	S429			284.cel
9	5	S427 S428 S429			1284.cel
10	45	S425 S427 S428 S429			396.cel
11	25	S425 S427 S428 S429			222.cel
12	11	S425 S427 S428 S429			1430.cel
13	6	S425 S427 S428 S429			129.cel
14	48	S428 S429			458.cel
15	14	S426 S429			147.cel
16	17	S423 S426 S429			155R.cel
17	3	S420 S423 S426 S429			106.cel
18	21	S420 S423 S426 S429			1622R.cel
19	15	S420 S423 S426 S429			1497R.cel
20	64	S420 S423 S426 S429			90.cel
21	22	S420 S423 S426 S429			1854R.cel
22	69	S420 S423 S426 S429			ge205.cel
23	20	S420 S423 S426 S429			1621.cel
24	66	S420 S423 S426 S429			94bis.cel
25	68	S420 S423 S426 S429			ge197.cel
26	26	S426 S429			236.cel
27	44	S424 S429			390.cel
28	47	S424 S429			444.cel
29	13	S424 S429			1453.cel
30	24	S424 S429			218.cel
31	18	S424 S429			157.cel
32	46	S429			428.cel
33	8	S429			1317.cel
34	52	S419 S422 S429			528bis.cel
35	31	S419 S422 S429			274.cel
36	1	S419 S422 S429			100R.cel
37	7	S419 S422 S429			1308.cel
38	19	S419 S422 S429			159.cel
39	30	S422 S429			269.cel
40	38	S429			328.cel
41	65	S429			93.cel
42	35	S429			30.cel
43	2	S429			104.cel
44	37	S429			323.cel
45	43	S429			360.cel
46	16	S421 S429			15.cel
47	23	S421 S429			190.cel
48	32	S421 S429			283.cel
49	36	S421 S429			300.cel
50	40	S429			345.cel
51	34	S429			288.cel
52	49	S429			461.cel
53	39	S429			344.cel
54	50	S429			506.cel
55	55	S429			563.cel
56	9	S429			1360.cel
57	54	S429			558.cel
58	53	S429			547.cel
59	60	S429			70.cel
60	10	S429			1399.cel
61	42	S429			356bis.cel
62	57	S429			57.cel
63	62	S429			83.cel
64	56	S429			566.cel
65	63	S429			84.cel
66	51	S429			527.cel
67	61	S429			80.cel
68	41	S429			349.cel
69	58	S429			574.cel

Genes Names

1	7	213684_s_at		LIM Chr:4q22
2	4	212249_at		PIK3R1 Chr:5q13.1
3	9	215342_s_at		HHL Chr:1q24
4	13	224828_at		CPEB4 Chr:5q21
5	6	212993_at		--- ---
6	14	224829_at		CPEB4 Chr:5q21
7	1	1559391_s_at		--- ---
8	2	204964_s_at		SSPN Chr:12p11.2
9	12	223185_s_at		BHLHB3 Chr:12p11.23-p12.1
10	8	213998_s_at		DDX17 Chr:22q13.1
11	11	223079_s_at		GLS Chr:2q32-q34
12	15	228471_at		LOC91526 Chr:2q33.1
13	5	212762_s_at		TCF7L2 Chr:10q25.3
14	10	222787_s_at		FLJ11273 Chr:7p21.3
15	16	231109_at		--- ---
16	21	243149_at		--- ---
17	17	235803_at		--- ---
18	3	209023_s_at		STAG2 Chr:xq25
19	24	244112_x_at		--- ---
20	18	236251_at		--- ---
21	22	243240_at		--- ---
22	23	244045_at		--- ---
23	19	241060_x_at		--- ---
24	20	242579_at		--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	6
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 22:05:08