S4_using_G2

Super-paramagnetic Clustering of 69 points in a 19 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Samples
  • Genes
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=11)

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Samples

    123 S300190.cel
    232 S300283.cel
    33 S300106.cel
    46 S300129.cel
    527 S300242.cel
    631 S299 S300274.cel
    75 S299 S3001284.cel
    843 S299 S300360.cel
    935 S299 S30030.cel
    1021 S299 S3001622R.cel
    119 S299 S3001360.cel
    1254 S299 S300558.cel
    1322 S299 S3001854R.cel
    148 S299 S3001317.cel
    1515 S299 S3001497R.cel
    1610 S299 S3001399.cel
    1736 S299 S300300.cel
    1811 S299 S3001430.cel
    1919 S299 S300159.cel
    2044 S299 S300390.cel
    2153 S299 S300547.cel
    2267 S299 S30097.cel
    2324 S299 S300218.cel
    2466 S299 S30094bis.cel
    2518 S299 S300157.cel
    2642 S299 S300356bis.cel
    2745 S299 S300396.cel
    2855 S299 S300563.cel
    2930 S299 S300269.cel
    307 S299 S3001308.cel
    3162 S299 S30083.cel
    3269 S299 S300ge205.cel
    3314 S297 S298 S299 S300147.cel
    3425 S297 S298 S299 S300222.cel
    3557 S297 S298 S299 S30057.cel
    3626 S297 S298 S299 S300236.cel
    3746 S298 S299 S300428.cel
    3864 S298 S299 S30090.cel
    3950 S299 S300506.cel
    4048 S299 S300458.cel
    4152 S300528bis.cel
    4228 S300246.cel
    4317 S300155R.cel
    4437 S300323.cel
    4563 S30084.cel
    4668 S300ge197.cel
    4729 S300254.cel
    4859 S30065R.cel
    4913 S3001453.cel
    501 S300100R.cel
    512 S300104.cel
    5220 S3001621.cel
    5356 S300566.cel
    5438 S300328.cel
    5539 S300344.cel
    5651 S300527.cel
    5734 S300288.cel
    5847 S300444.cel
    5960 S30070.cel
    6049 S300461.cel
    614 S30012.cel
    6212 S3001437.cel
    6365 S30093.cel
    6440 S300345.cel
    6558 S300574.cel
    6633 284.cel
    6741 349.cel
    6816 15.cel
    6961 80.cel

    Genes Names

    12201028_s_atCD99 Chr:xp22.32; yp11.3
    25201798_s_atFER1L3 Chr:10q24
    36203854_atIF Chr:4q25
    47204646_atDPYD Chr:1p22
    51200986_atSERPING1 Chr:11q12-q13.1
    612210427_x_atANXA2 Chr:15q21-q22
    74201590_x_atANXA2 Chr:15q21-q22
    814213503_x_atANXA2 Chr:15q21-q22
    911208816_x_atANXA2P1 Chr:4q21-q31
    103201426_s_atVIM Chr:10p13
    1110208747_s_atC1S Chr:12p13
    1213212067_s_atC1R Chr:12p13
    1317221773_atELK3 Chr:12q23
    148207808_s_atPROS1 Chr:3q11.2
    1515214853_s_atSHC1 Chr:1q21
    1616218983_atC1RL Chr:12p13.31
    179208659_atCLIC1 Chr:6p22.1-p21.2
    1818226621_atFGG Chr:4q28
    1919228141_at--- ---

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)11
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size1

    Created by SPC_HTML_REPORT on 12-Aug-2004 17:11:41