S4_using_G19

Super-paramagnetic Clustering of 69 points in a 80 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=14)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	3	S417 S418	106.cel
2	14	S417 S418	147.cel
3	12	S417 S418	1437.cel
4	9	S417 S418	1360.cel
5	10	S417 S418	1399.cel
6	1	S417 S418	100R.cel
7	57	S417 S418	57.cel
8	7	S417 S418	1308.cel
9	23	S417 S418	190.cel
10	29	S417 S418	254.cel
11	17	S417 S418	155R.cel
12	34	S417 S418	288.cel
13	60	S417 S418	70.cel
14	11	S417 S418	1430.cel
15	6	S417 S418	129.cel
16	30	S417 S418	269.cel
17	32	S417 S418	283.cel
18	41	S417 S418	349.cel
19	43	S417 S418	360.cel
20	33	S417 S418	284.cel
21	13	S417 S418	1453.cel
22	36	S417 S418	300.cel
23	40	S417 S418	345.cel
24	44	S417 S418	390.cel
25	4	S417 S418	12.cel
26	58	S417 S418	574.cel
27	62	S417 S418	83.cel
28	69	S417 S418	ge205.cel
29	52	S417 S418	528bis.cel
30	53	S417 S418	547.cel
31	8	S414 S415 S416 S418	1317.cel
32	15	S414 S415 S416 S418	1497R.cel
33	20	S414 S415 S416 S418	1621.cel
34	22	S414 S415 S416 S418	1854R.cel
35	21	S414 S415 S416 S418	1622R.cel
36	31	S414 S415 S416 S418	274.cel
37	24	S414 S415 S416 S418	218.cel
38	39	S414 S415 S416 S418	344.cel
39	48	S414 S415 S416 S418	458.cel
40	5	S414 S415 S416 S418	1284.cel
41	19	S414 S415 S416 S418	159.cel
42	25	S414 S415 S416 S418	222.cel
43	45	S414 S415 S416 S418	396.cel
44	18	S414 S415 S416 S418	157.cel
45	64	S414 S415 S416 S418	90.cel
46	35	S414 S415 S416 S418	30.cel
47	67	S414 S415 S416 S418	97.cel
48	27	S414 S415 S416 S418	242.cel
49	47	S414 S415 S416 S418	444.cel
50	50	S414 S415 S416 S418	506.cel
51	51	S414 S415 S416 S418	527.cel
52	37	S414 S415 S416 S418	323.cel
53	38	S414 S415 S416 S418	328.cel
54	56	S414 S415 S416 S418	566.cel
55	68	S414 S415 S416 S418	ge197.cel
56	66	S414 S415 S416 S418	94bis.cel
57	63	S414 S415 S416 S418	84.cel
58	26	S414 S415 S416 S418	236.cel
59	42	S414 S415 S416 S418	356bis.cel
60	28	S414 S415 S416 S418	246.cel
61	59	S414 S415 S416 S418	65R.cel
62	54	S414 S415 S416 S418	558.cel
63	2	S415 S416 S418	104.cel
64	49	S415 S416 S418	461.cel
65	55	S416 S418	563.cel
66	46		428.cel
67	16		15.cel
68	61		80.cel
69	65		93.cel

Genes Names

1	38	218469_at	GREM1 Chr:15q13-q15
2	28	211890_x_at	CAPN3 Chr:15q15.1-q21.1
3	26	210944_s_at	CAPN3 Chr:15q15.1-q21.1
4	33	214475_x_at	CAPN3 Chr:15q15.1-q21.1
5	27	211836_s_at	MOG Chr:6p22-p21.3
6	56	228624_at	FLJ11155 Chr:4q32.1
7	14	204733_at	KLK6 Chr:19q13.3
8	42	219750_at	FLJ11155 Chr:4q32.1
9	36	217613_at	FLJ11155 Chr:4q32.1
10	37	218094_s_at	C20orf35 Chr:20q13.12
11	18	205989_s_at	MOG Chr:6p22-p21.3
12	47	223699_at	CNDP1 Chr:18q22.3
13	6	1562608_at	--- ---
14	50	225822_at	MGC17299 Chr:1p34.1
15	9	204073_s_at	C11orf9 Chr:11q12-q13.1
16	43	220026_at	CLCA4 Chr:1p31-p22
17	20	207323_s_at	MBP Chr:18q23
18	10	204378_at	BCAS1 Chr:20q13.2-q13.3
19	22	209072_at	MBP Chr:18q23
20	2	1555807_a_at	MOG Chr:6p22-p21.3
21	31	213371_at	LDB3 Chr:10q22.3-q23.2
22	25	210657_s_at	PNUTL2 Chr:17q22-q23
23	24	210193_at	MOBP Chr:3p21.33
24	30	212829_at	--- ---
25	7	1565809_x_at	--- Chr:1p36.33
26	70	238498_at	--- ---
27	34	214650_x_at	MOG Chr:6p22-p21.3
28	15	204777_s_at	MAL Chr:2cen-q13
29	58	229781_at	--- ---
30	57	228891_at	LOC349236 Chr:9q22.2
31	78	242765_at	MOBP Chr:3p21.33
32	23	210169_at	KIAA0420 Chr:16p13.3
33	60	231911_at	KIAA1189 Chr:2q24.2
34	21	207659_s_at	MOBP Chr:3p21.33
35	74	241717_at	LOC285281 Chr:3p21.33
36	69	238008_at	MGC35308 Chr:6q27
37	46	223572_at	KIAA1173 Chr:3p21.33
38	61	232388_at	CNTNAP4 Chr:16q23.1
39	1	1553765_a_at	KIAA1900 Chr:6q16.3
40	66	235794_at	MOBP Chr:3p21.33
41	44	221868_at	KIAA1155 Chr:2p13.2
42	4	1557943_at	CNP Chr:17q21
43	3	1557481_a_at	--- ---
44	77	242002_at	TCBA1 Chr:6q21
45	12	204547_at	RAB40B Chr:17q25.3
46	45	222862_s_at	AK5 Chr:1p31
47	64	235342_at	SPOCK3 Chr:4q32.3
48	17	205814_at	GRM3 Chr:7q21.1-q21.2
49	67	236420_s_at	TMEM16D Chr:12q23.3
50	71	239575_at	TMEM10 Chr:10q23-q24
51	75	241833_at	--- ---
52	16	205637_s_at	SH3GL3 Chr:15q24
53	72	240053_x_at	--- ---
54	5	1562473_at	--- ---
55	8	202890_at	MAP7 Chr:6q23.2
56	13	204681_s_at	RAPGEF5 Chr:7p15.3
57	41	219429_at	FA2H Chr:16q23
58	52	227006_at	PPP1R14A Chr:19q13.1
59	65	235476_at	TSBF1 Chr:3q26.1
60	19	207308_at	SLCO1A2 Chr:12p12
61	29	212750_at	PPP1R16B Chr:20q12
62	40	219305_x_at	FBXO2 Chr:1p36.21
63	80	41577_at	PPP1R16B Chr:20q12
64	79	244113_at	--- ---
65	35	214769_at	CLCN4 Chr:Xp22.3
66	39	218651_s_at	FLJ11196 Chr:15q22.32
67	48	224482_s_at	RAB11-FIP4 Chr:17q11.2
68	76	241873_at	UNC5C Chr:4q21-q23
69	51	226018_at	Ells1 Chr:7p15.1
70	54	227440_at	EB-1 Chr:12q23.1-q23.2
71	59	230104_s_at	p25 Chr:5p15.3
72	73	240292_x_at	EB-1 Chr:12q23.1-q23.2
73	53	227439_at	EB-1 Chr:12q23.1-q23.2
74	55	227441_s_at	EB-1 Chr:12q23.1-q23.2
75	62	234261_at	--- ---
76	68	236838_at	--- ---
77	11	204467_s_at	SNCA Chr:4q21
78	49	225727_at	PLEKHH1 Chr:14q24.1
79	63	235236_at	--- ---
80	32	213839_at	KIAA0500 Chr:14q32.2

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	14
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 21:45:57

S4_using_G19

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=14)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC