S4_using_G18

Super-paramagnetic Clustering of 69 points in a 25 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Samples

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=7)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	16				15.cel
2	61				80.cel
3	2				104.cel
4	9				1360.cel
5	17				155R.cel
6	38	S412			328.cel
7	36	S412			300.cel
8	7	S412			1308.cel
9	34	S412			288.cel
10	59	S412			65R.cel
11	12				1437.cel
12	23				190.cel
13	13				1453.cel
14	49				461.cel
15	55				563.cel
16	27				242.cel
17	8				1317.cel
18	29	S411			254.cel
19	24	S411			218.cel
20	26	S411			236.cel
21	14	S411			147.cel
22	15	S411			1497R.cel
23	21	S411			1622R.cel
24	19	S411			159.cel
25	30	S411			269.cel
26	31	S411			274.cel
27	10	S411			1399.cel
28	57	S411			57.cel
29	25	S407 S411			222.cel
30	22	S407 S411			1854R.cel
31	46	S407 S411			428.cel
32	5	S407 S411			1284.cel
33	66	S407 S411			94bis.cel
34	45	S407 S411			396.cel
35	64	S411			90.cel
36	42	S411			356bis.cel
37	69	S411			ge205.cel
38	48	S411			458.cel
39	58				574.cel
40	35				30.cel
41	20				1621.cel
42	39				344.cel
43	50				506.cel
44	32				283.cel
45	28				246.cel
46	54				558.cel
47	67				97.cel
48	1	S408 S410			100R.cel
49	40	S408 S410			345.cel
50	44	S408 S410			390.cel
51	51	S408 S410			527.cel
52	18	S410			157.cel
53	47	S410			444.cel
54	65				93.cel
55	56				566.cel
56	62				83.cel
57	41				349.cel
58	43				360.cel
59	11	S413			1430.cel
60	3	S409 S413			106.cel
61	6	S409 S413			129.cel
62	53	S409 S413			547.cel
63	4	S409 S413			12.cel
64	60	S409 S413			70.cel
65	37	S409 S413			323.cel
66	33	S413			284.cel
67	63	S413			84.cel
68	68	S413			ge197.cel
69	52				528bis.cel

Genes Names

1	6	205741_s_at		DTNA Chr:18q12
2	8	207443_at		NR2E1 Chr:6q21
3	18	217678_at		SLC7A11 Chr:4q28-q32
4	11	209921_at		SLC7A11 Chr:4q28-q32
5	5	205363_at		BBOX1 Chr:11p14.2
6	3	204041_at		MAOB Chr:xp11.23
7	10	209301_at		CA2 Chr:8q22
8	12	210066_s_at		AQP4 Chr:18q11.2-q12.1
9	13	210067_at		AQP4 Chr:18q11.2-q12.1
10	2	203723_at		ITPKB Chr:1q42.13
11	4	204363_at		F3 Chr:1p22-p21
12	7	206022_at		NDP Chr:xp11.4
13	14	210068_s_at		AQP4 Chr:18q11.2-q12.1
14	15	210906_x_at		AQP4 Chr:18q11.2-q12.1
15	1	202800_at		SLC1A3 Chr:5p13
16	16	213395_at		MLC1 Chr:22q13.33
17	17	213618_at		CENTD1 Chr:4p15.1
18	9	207455_at		P2RY1 Chr:3q25.2
19	23	231925_at		--- ---
20	25	238003_at		FLJ25530 Chr:11q24.2
21	19	223605_at		SLC25A18 Chr:22q11.2
22	21	226228_at		AQP4 Chr:18q11.2-q12.1
23	20	226189_at		--- ---
24	22	227084_at		DTNA Chr:18q12
25	24	235795_at		PAX6 Chr:11p13

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	7
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 21:30:12