S4_using_G17

Super-paramagnetic Clustering of 69 points in a 141 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=15)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	12		1437.cel
2	1		100R.cel
3	7		1308.cel
4	23		190.cel
5	10		1399.cel
6	16		15.cel
7	30		269.cel
8	6		129.cel
9	40		345.cel
10	57		57.cel
11	27	S406	242.cel
12	28	S406	246.cel
13	51	S406	527.cel
14	33	S406	284.cel
15	32	S405 S406	283.cel
16	22	S404 S405 S406	1854R.cel
17	2	S402 S403 S404 S405 S406	104.cel
18	14	S402 S403 S404 S405 S406	147.cel
19	26	S402 S403 S404 S405 S406	236.cel
20	15	S402 S403 S404 S405 S406	1497R.cel
21	13	S402 S403 S404 S405 S406	1453.cel
22	50	S402 S403 S404 S405 S406	506.cel
23	38	S402 S403 S404 S405 S406	328.cel
24	41	S402 S403 S404 S405 S406	349.cel
25	18	S402 S403 S404 S405 S406	157.cel
26	64	S402 S403 S404 S405 S406	90.cel
27	31	S402 S403 S404 S405 S406	274.cel
28	5	S402 S403 S404 S405 S406	1284.cel
29	8	S402 S403 S404 S405 S406	1317.cel
30	49	S402 S403 S404 S405 S406	461.cel
31	56	S402 S403 S404 S405 S406	566.cel
32	24	S402 S403 S404 S405 S406	218.cel
33	63	S402 S403 S404 S405 S406	84.cel
34	17	S402 S403 S404 S405 S406	155R.cel
35	37	S402 S403 S404 S405 S406	323.cel
36	29	S402 S403 S404 S405 S406	254.cel
37	59	S402 S403 S404 S405 S406	65R.cel
38	66	S402 S403 S404 S405 S406	94bis.cel
39	19	S402 S403 S404 S405 S406	159.cel
40	20	S402 S403 S404 S405 S406	1621.cel
41	21	S402 S403 S404 S405 S406	1622R.cel
42	48	S402 S403 S404 S405 S406	458.cel
43	25	S402 S403 S404 S405 S406	222.cel
44	47	S402 S403 S404 S405 S406	444.cel
45	67	S402 S403 S404 S405 S406	97.cel
46	35	S402 S403 S404 S405 S406	30.cel
47	42	S402 S403 S404 S405 S406	356bis.cel
48	45	S402 S403 S404 S405 S406	396.cel
49	46	S402 S403 S404 S405 S406	428.cel
50	55	S403 S404 S405 S406	563.cel
51	34	S404 S405 S406	288.cel
52	44	S404 S405 S406	390.cel
53	65	S404 S405 S406	93.cel
54	9	S404 S405 S406	1360.cel
55	54	S404 S405 S406	558.cel
56	68	S404 S405 S406	ge197.cel
57	69	S404 S405 S406	ge205.cel
58	39	S404 S405 S406	344.cel
59	60	S404 S405 S406	70.cel
60	61	S404 S405 S406	80.cel
61	43	S405 S406	360.cel
62	11	S406	1430.cel
63	36	S406	300.cel
64	3	S406	106.cel
65	62	S406	83.cel
66	52	S406	528bis.cel
67	4	S406	12.cel
68	58	S406	574.cel
69	53	S406	547.cel

Genes Names

1	22	204337_at	RGS4 Chr:1q23.2
2	23	204339_s_at	RGS4 Chr:1q23.2
3	16	203798_s_at	VSNL1 Chr:2p24.3
4	93	228262_at	FLJ14503 Chr:xp22.13
5	40	206376_at	SLC6A15 Chr:12q21.3
6	91	227702_at	CYP4X1 Chr:1p33
7	41	206456_at	GABRA5 Chr:15q11.2-q12
8	139	243929_at	--- ---
9	72	219937_at	TRHDE Chr:12q15-q21
10	63	214945_at	NY-REN-7 Chr:5q35.3
11	8	1556366_s_at	FLJ33708 Chr:6p24.3
12	69	219425_at	SULT4A1 Chr:22q13.2-q13.31
13	3	1553864_at	DKFZp761H2121 Chr:10q26.13
14	43	206678_at	GABRA1 Chr:5q34-q35
15	113	233002_at	KIAA1622 Chr:14q32.2
16	101	230137_at	FLJ30834 Chr:4q27
17	73	220030_at	STYK1 Chr:12p13.31
18	44	206780_at	GAD2 Chr:10p11.23
19	7	1556351_at	HCN1 Chr:5p12
20	5	1556095_at	UNC13C Chr:15q21.1
21	19	204081_at	NRGN Chr:11q24
22	56	213921_at	SST Chr:3q28
23	32	205113_at	NEF3 Chr:8p21
24	21	204229_at	SLC17A7 Chr:19q13
25	135	242404_at	--- ---
26	1	1552714_at	CREG2 Chr:2q12.1
27	108	231489_x_at	--- ---
28	37	205827_at	CCK Chr:3p22-p21.3
29	140	244118_at	GABRA1 Chr:5q34-q35
30	2	1553422_s_at	A2BP1 Chr:16p13.3
31	9	1557122_s_at	--- ---
32	81	224650_at	MAL2 Chr:8q23
33	18	203999_at	SYT1 Chr:12cen-q21
34	50	210247_at	SYN2 Chr:3p25
35	112	232426_at	--- ---
36	141	52837_at	KIAA1644 Chr:22q13
37	74	220359_s_at	ARPP-21 Chr:3p22.1
38	75	221217_s_at	A2BP1 Chr:16p13.3
39	17	203998_s_at	SYT1 Chr:12cen-q21
40	49	210227_at	DLGAP2 Chr:8p23
41	6	1556096_s_at	UNC13C Chr:15q21.1
42	105	230551_at	--- ---
43	120	237384_x_at	--- ---
44	119	236456_at	PTPN5 Chr:11p15.1
45	132	241807_x_at	--- ---
46	35	205635_at	HAPIP Chr:3q21.2
47	57	214044_at	RYR2 Chr:1q42.1-q43
48	11	1568612_at	GABRG2 Chr:5q31.1-q33.1
49	95	229039_at	SYN2 Chr:3p25
50	25	204546_at	KIAA0513 Chr:16q24.1
51	14	202507_s_at	SNAP25 Chr:20p12-p11.2
52	71	219671_at	HPCAL4 Chr:1p34.2
53	84	226086_at	SYT13 Chr:11p12-p11
54	34	205414_s_at	KIAA0672 Chr:17p12
55	70	219659_at	ATP8A2 Chr:13q12-13
56	48	210040_at	SLC12A5 Chr:20q13.12
57	130	241399_at	TAFA2 Chr:12q13.3-q14.1
58	83	225111_s_at	NAPB Chr:20p12.3-p11.21
59	127	239765_at	--- ---
60	86	227053_at	PACSIN1 Chr:6p21.3
61	64	214956_at	--- ---
62	123	239357_at	--- ---
63	58	214098_at	KIAA1107 Chr:1p22.1
64	62	214811_at	KIAA0318 Chr:12q24.33
65	80	224209_s_at	GDA Chr:9q21.11-21.33
66	36	205691_at	SYNGR3 Chr:16p13
67	46	209726_at	CA11 Chr:19q13.3
68	124	239579_at	ABHD7 Chr:1p22.1
69	79	224164_at	TPM3 Chr:1q21.2
70	96	229254_at	DKFZp761N1114 Chr:1q32.1
71	131	241672_at	LOC400120 Chr:13q13.2
72	65	215241_at	TMEM16C Chr:11p14.3
73	13	202260_s_at	STXBP1 Chr:9q34.1
74	39	206196_s_at	RPIP8 Chr:17q21.31
75	77	223529_at	SYT4 Chr:18q12.3
76	27	204722_at	SCN3B Chr:11q24.1
77	60	214230_at	CDC42 Chr:1p36.1
78	115	235066_at	MAP4 Chr:3p21
79	78	223654_s_at	BRUNOL4 Chr:18q12
80	122	238966_at	BRUNOL4 Chr:18q12
81	47	210016_at	MYT1L Chr:2p25.3
82	98	229300_at	--- ---
83	138	243666_at	BRUNOL4 Chr:18q12
84	15	202712_s_at	CKMT1 Chr:15q15
85	28	204723_at	SCN3B Chr:11q24.1
86	103	230262_at	--- ---
87	136	242999_at	ARHGEF7 Chr:13q34
88	45	209556_at	NCDN Chr:1p34.3
89	85	226382_at	LOC283070 Chr:10p14
90	10	1559545_at	--- ---
91	67	218623_at	HMP19 Chr:5q35.2
92	100	230076_at	FLJ10156 Chr:17p13.2
93	121	238786_at	--- ---
94	55	213904_at	--- ---
95	68	219308_s_at	AK5 Chr:1p31
96	106	230698_at	--- ---
97	128	239767_at	--- ---
98	20	204134_at	PDE2A Chr:11q13.3
99	4	1555958_at	CRTAC1 Chr:10q22
100	24	204465_s_at	INA Chr:10q24.33
101	38	206013_s_at	ACTL6 Chr:7q22
102	30	204869_at	PCSK2 Chr:20p11.2
103	61	214376_at	--- ---
104	110	232305_at	HMGCLL1 Chr:6p12.1
105	118	236448_at	UNC5A Chr:5q35.3
106	102	230255_at	GABRD Chr:1p36.3
107	129	241382_at	--- ---
108	59	214111_at	OPCML Chr:11q25
109	26	204697_s_at	CHGA Chr:14q32
110	76	223500_at	CPLX1 Chr:4p16.3
111	87	227226_at	C6orf117 Chr:6q15
112	97	229294_at	JPH3 Chr:16q24.3
113	107	230932_at	--- ---
114	104	230497_at	BRUNOL5 Chr:19p13
115	133	242193_at	--- Chr:8q12.3
116	125	239671_at	--- ---
117	31	204953_at	SNAP91 Chr:6q15
118	88	227240_at	NGEF Chr:2q37
119	90	227690_at	GABRB3 Chr:15q11.2-q12
120	99	229724_at	GABRB3 Chr:15q11.2-q12
121	111	232411_at	--- ---
122	116	235230_at	--- ---
123	114	233139_at	--- ---
124	117	236166_at	LOC285147 Chr:2p25.2
125	12	202073_at	OPTN Chr:10p14
126	33	205257_s_at	AMPH Chr:7p14-p13
127	54	213307_at	SHANK2 Chr:11q13.2
128	29	204763_s_at	GNAO1 Chr:16q13
129	89	227641_at	MGC33974 Chr:16p13.3
130	51	210721_s_at	PAK7 Chr:20p12
131	92	227830_at	GABRB3 Chr:15q11.2-q12
132	109	231986_at	RIMS1 Chr:6q12-q13
133	137	243163_at	--- ---
134	52	212473_s_at	MICAL2 Chr:11p15.3
135	42	206552_s_at	TAC1 Chr:7q21-q22
136	94	229029_at	--- ---
137	53	213280_at	GARNL4 Chr:17p13.3
138	66	216086_at	SV2C Chr:5q13.3
139	82	224801_at	NDFIP2 Chr:13q22.2
140	126	239678_at	--- ---
141	134	242344_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	15
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 21:12:40

S4_using_G17

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=15)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC