S4_using_G16

Super-paramagnetic Clustering of 69 points in a 49 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=8)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	2		104.cel
2	61		80.cel
3	65		93.cel
4	16		15.cel
5	8		1317.cel
6	68	S401	ge197.cel
7	63	S401	84.cel
8	37	S401	323.cel
9	17	S401	155R.cel
10	55	S399 S400 S401	563.cel
11	64	S399 S400 S401	90.cel
12	4	S399 S400 S401	12.cel
13	18	S399 S400 S401	157.cel
14	39	S400 S401	344.cel
15	13	S400 S401	1453.cel
16	36	S400 S401	300.cel
17	9	S400 S401	1360.cel
18	59	S400 S401	65R.cel
19	34	S400 S401	288.cel
20	52	S400 S401	528bis.cel
21	23	S400 S401	190.cel
22	32	S400 S401	283.cel
23	6	S400 S401	129.cel
24	30	S400 S401	269.cel
25	50	S400 S401	506.cel
26	11	S400 S401	1430.cel
27	69	S400 S401	ge205.cel
28	7	S400 S401	1308.cel
29	46	S400 S401	428.cel
30	60	S400 S401	70.cel
31	10	S400 S401	1399.cel
32	19	S400 S401	159.cel
33	51	S400 S401	527.cel
34	35	S400 S401	30.cel
35	58	S400 S401	574.cel
36	1	S400 S401	100R.cel
37	40	S400 S401	345.cel
38	41	S400 S401	349.cel
39	38	S400 S401	328.cel
40	53	S400 S401	547.cel
41	27	S400 S401	242.cel
42	33	S400 S401	284.cel
43	62	S400 S401	83.cel
44	47	S400 S401	444.cel
45	67	S400 S401	97.cel
46	48	S400 S401	458.cel
47	28	S400 S401	246.cel
48	12	S400 S401	1437.cel
49	44	S400 S401	390.cel
50	54	S400 S401	558.cel
51	20	S400 S401	1621.cel
52	5	S397 S398 S400 S401	1284.cel
53	15	S397 S398 S400 S401	1497R.cel
54	42	S397 S398 S400 S401	356bis.cel
55	14	S397 S398 S400 S401	147.cel
56	24	S397 S398 S400 S401	218.cel
57	66	S397 S398 S400 S401	94bis.cel
58	45	S397 S398 S400 S401	396.cel
59	21	S398 S400 S401	1622R.cel
60	22	S400 S401	1854R.cel
61	25	S400 S401	222.cel
62	31	S400 S401	274.cel
63	56	S400 S401	566.cel
64	57	S400 S401	57.cel
65	3	S400 S401	106.cel
66	26	S400 S401	236.cel
67	49	S400 S401	461.cel
68	29	S401	254.cel
69	43	S401	360.cel

Genes Names

1	15	209291_at	ID4 Chr:6p22-p21
2	16	209292_at	ID4 Chr:6p22-p21
3	41	226933_s_at	ID4 Chr:6p22-p21
4	5	203632_s_at	GPRC5B Chr:16p12
5	14	209170_s_at	GPM6B Chr:xp22.2
6	19	209504_s_at	PLEKHB1 Chr:11q13.5-q14.1
7	11	209167_at	GPM6B Chr:Xp22.2
8	12	209168_at	GPM6B Chr:xp22.2
9	3	203540_at	GFAP Chr:17q21
10	13	209169_at	GPM6B Chr:xp22.2
11	23	209686_at	S100B Chr:21q22.3
12	34	218087_s_at	SORBS1 Chr:10q23.3-q24.1
13	35	218899_s_at	BAALC Chr:8q22.3
14	36	222780_s_at	BAALC Chr:8q22.3
15	4	203562_at	FEZ1 Chr:11q24.2
16	47	231898_x_at	SOX2OT Chr:3q26.3-q27
17	32	216033_s_at	FYN Chr:6q21
18	28	212486_s_at	FYN Chr:6q21
19	8	205433_at	BCHE Chr:3q26.1-q26.2
20	6	204469_at	PTPRZ1 Chr:7q31.3
21	10	206826_at	PMP2 Chr:8q21.3-q22.1
22	48	235127_at	PMP2 Chr:8q21.3-q22.1
23	9	205475_at	SCRG1 Chr:4q31-q32
24	24	209859_at	TRIM9 Chr:14q22.1
25	25	211596_s_at	LRIG1 Chr:3p14
26	27	212070_at	GPR56 Chr:16q13
27	31	214023_x_at	MGC8685 Chr:6p25
28	49	44783_s_at	HEY1 Chr:8q21
29	26	212062_at	ATP9A Chr:20q13.11-q13.2
30	30	213849_s_at	PPP2R2B Chr:5q31-5q32
31	20	209598_at	PNMA2 Chr:8p21.1
32	39	225491_at	SLC1A2 Chr:11p13-p12
33	40	226627_at	38238 Chr:5q31
34	1	1555471_a_at	FMN2 Chr:1q43
35	38	223618_at	FMN2 Chr:1q43
36	2	202986_at	ARNT2 Chr:15q24
37	21	209617_s_at	CTNND2 Chr:5p15.2
38	22	209618_at	CTNND2 Chr:5p15.2
39	18	209470_s_at	GPM6A Chr:4q34
40	43	228546_at	DPP6 Chr:7q36.2-q36.3
41	17	209469_at	GPM6A Chr:4q34
42	46	229053_at	LOC51760 Chr:16p13.11
43	42	228375_at	IGSF11 Chr:3q13.33
44	44	228581_at	KCNJ10 Chr:1q22-q23
45	45	228780_at	POU3F3 Chr:2q12.1
46	37	222803_at	PRTFDC1 Chr:10p12.31
47	7	204471_at	GAP43 Chr:3q13.1-q13.2
48	33	216963_s_at	GAP43 Chr:3q13.1-q13.2
49	29	213721_at	SOX2 Chr:3q26.3-q27

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 20:55:18

S4_using_G16

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=8)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC