S4_using_G14

Super-paramagnetic Clustering of 69 points in a 26 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=9)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	16	S387 S393	15.cel
2	24	S387 S393	218.cel
3	63	S387 S393	84.cel
4	56	S387 S393	566.cel
5	60	S393	70.cel
6	61	S382 S384 S388 S391 S395	80.cel
7	27	S382 S384 S388 S391 S395	242.cel
8	6	S382 S384 S388 S391 S395	129.cel
9	35	S382 S384 S388 S391 S395	30.cel
10	58	S382 S384 S388 S391 S395	574.cel
11	41	S382 S384 S388 S391 S395	349.cel
12	7	S382 S384 S388 S391 S395	1308.cel
13	21	S382 S384 S388 S391 S395	1622R.cel
14	26	S382 S384 S388 S391 S395	236.cel
15	36	S382 S384 S388 S391 S395	300.cel
16	11	S382 S384 S388 S391 S395	1430.cel
17	25	S382 S384 S388 S391 S395	222.cel
18	44	S382 S384 S388 S391 S395	390.cel
19	47	S382 S384 S388 S391 S395	444.cel
20	69	S382 S384 S388 S391 S395	ge205.cel
21	30	S382 S384 S388 S391 S395	269.cel
22	42	S382 S384 S388 S391 S395	356bis.cel
23	8	S382 S384 S388 S391 S395	1317.cel
24	64	S382 S384 S388 S391 S395	90.cel
25	19	S382 S384 S388 S391 S395	159.cel
26	46	S382 S384 S388 S391 S395	428.cel
27	4	S382 S384 S388 S391 S395	12.cel
28	53	S382 S384 S388 S391 S395	547.cel
29	45	S382 S384 S388 S391 S395	396.cel
30	18	S382 S384 S388 S391 S395	157.cel
31	10	S382 S384 S388 S391 S395	1399.cel
32	3	S382 S384 S388 S391 S395	106.cel
33	48	S382 S384 S388 S391 S395	458.cel
34	15	S382 S384 S388 S391 S395	1497R.cel
35	20	S382 S384 S388 S391 S395	1621.cel
36	40	S382 S384 S388 S391 S395	345.cel
37	1	S382 S384 S388 S391 S395	100R.cel
38	12	S382 S384 S388 S391 S395	1437.cel
39	65	S384 S388 S391 S395	93.cel
40	55	S388 S391 S395	563.cel
41	51	S391 S395	527.cel
42	50	S391 S395	506.cel
43	62	S385 S389 S395	83.cel
44	32	S385 S389 S395	283.cel
45	66	S385 S389 S395	94bis.cel
46	33	S385 S389 S395	284.cel
47	67	S389 S395	97.cel
48	37	S395	323.cel
49	9	S390 S394 S395	1360.cel
50	2	S390 S394 S395	104.cel
51	54	S390 S394 S395	558.cel
52	34	S390 S394 S395	288.cel
53	29	S394 S395	254.cel
54	68	S394 S395	ge197.cel
55	38	S395	328.cel
56	23	S392 S395	190.cel
57	13	S392 S395	1453.cel
58	49	S392 S395	461.cel
59	52	S392 S395	528bis.cel
60	43	S395	360.cel
61	5	S383 S386 S395	1284.cel
62	57	S383 S386 S395	57.cel
63	14	S383 S386 S395	147.cel
64	31	S383 S386 S395	274.cel
65	39	S386 S395	344.cel
66	22		1854R.cel
67	17		155R.cel
68	59		65R.cel
69	28		246.cel

Genes Names

1	1	203180_at	ALDH1A3 Chr:15q26.3
2	2	203434_s_at	MME Chr:3q25.1-q25.2
3	6	205619_s_at	MEOX1 Chr:17q21
4	21	231766_s_at	COL12A1 Chr:6q12-q13
5	5	205431_s_at	BMP5 Chr:6p12.1
6	3	204776_at	THBS4 Chr:5q13
7	4	205430_at	BMP5 Chr:6p12.1
8	7	205713_s_at	COMP Chr:19p13.1
9	24	236035_at	--- ---
10	8	205848_at	GAS2 Chr:11p14.3-p15.2
11	12	218499_at	MST4 Chr:xq26.2
12	23	235944_at	FIBL-6 Chr:1q25.3
13	9	212414_s_at	38236 Chr:xq25
14	10	213456_at	SOSTDC1 Chr:7p21.2
15	25	239468_at	C10orf48 Chr:10p12.1
16	26	244885_at	EBF2 Chr:8p21.2
17	14	220014_at	LOC51334 Chr:5q23.2
18	15	220065_at	TNMD Chr:xq21.33-q23
19	16	226834_at	ASAM Chr:11q24.1
20	22	232090_at	--- ---
21	13	219837_s_at	C17 Chr:4p16-p15
22	17	226930_at	FNDC1 Chr:6q25
23	18	227070_at	LOC83468 Chr:12q
24	11	217525_at	UNQ564 Chr:11p15.4
25	19	227850_x_at	CDC42EP5 Chr:19q13.42
26	20	229839_at	MGC45780 Chr:8p21.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	9
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 20:24:27

S4_using_G14

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=9)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC