S4_using_G13

Super-paramagnetic Clustering of 69 points in a 39 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=14)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	3		106.cel
2	16		15.cel
3	41		349.cel
4	31		274.cel
5	15		1497R.cel
6	8	S380 S381	1317.cel
7	29	S379 S380 S381	254.cel
8	34	S379 S380 S381	288.cel
9	17	S378 S379 S380 S381	155R.cel
10	2	S378 S379 S380 S381	104.cel
11	18	S378 S379 S380 S381	157.cel
12	13	S378 S379 S380 S381	1453.cel
13	26	S378 S379 S380 S381	236.cel
14	21	S378 S379 S380 S381	1622R.cel
15	32	S378 S379 S380 S381	283.cel
16	24	S378 S379 S380 S381	218.cel
17	27	S378 S379 S380 S381	242.cel
18	19	S378 S379 S380 S381	159.cel
19	28	S378 S379 S380 S381	246.cel
20	51	S378 S379 S380 S381	527.cel
21	12	S378 S379 S380 S381	1437.cel
22	7	S378 S379 S380 S381	1308.cel
23	10	S378 S379 S380 S381	1399.cel
24	14	S378 S379 S380 S381	147.cel
25	23	S378 S379 S380 S381	190.cel
26	43	S378 S379 S380 S381	360.cel
27	52	S378 S379 S380 S381	528bis.cel
28	66	S378 S379 S380 S381	94bis.cel
29	5	S378 S379 S380 S381	1284.cel
30	25	S378 S379 S380 S381	222.cel
31	6	S378 S379 S380 S381	129.cel
32	30	S378 S379 S380 S381	269.cel
33	38	S378 S379 S380 S381	328.cel
34	35	S378 S379 S380 S381	30.cel
35	42	S378 S379 S380 S381	356bis.cel
36	46	S378 S379 S380 S381	428.cel
37	69	S378 S379 S380 S381	ge205.cel
38	20	S378 S379 S380 S381	1621.cel
39	39	S378 S379 S380 S381	344.cel
40	49	S378 S379 S380 S381	461.cel
41	22	S378 S379 S380 S381	1854R.cel
42	64	S378 S379 S380 S381	90.cel
43	40	S378 S379 S380 S381	345.cel
44	1	S378 S379 S380 S381	100R.cel
45	44	S378 S379 S380 S381	390.cel
46	45	S378 S379 S380 S381	396.cel
47	54	S378 S379 S380 S381	558.cel
48	60	S378 S379 S380 S381	70.cel
49	63	S378 S379 S380 S381	84.cel
50	37	S378 S379 S380 S381	323.cel
51	57	S378 S379 S380 S381	57.cel
52	53	S378 S379 S380 S381	547.cel
53	68	S378 S379 S380 S381	ge197.cel
54	56	S378 S379 S380 S381	566.cel
55	65	S378 S379 S380 S381	93.cel
56	9	S378 S379 S380 S381	1360.cel
57	59	S378 S379 S380 S381	65R.cel
58	48	S378 S379 S380 S381	458.cel
59	47	S378 S379 S380 S381	444.cel
60	50	S378 S379 S380 S381	506.cel
61	67	S381	97.cel
62	62		83.cel
63	58		574.cel
64	4		12.cel
65	36		300.cel
66	33		284.cel
67	11		1430.cel
68	61		80.cel
69	55		563.cel

Genes Names

1	4	201131_s_at	CDH1 Chr:16q22.1
2	12	206100_at	CPM Chr:12q14.3
3	5	202246_s_at	CDK4 Chr:12q14
4	6	203226_s_at	SAS Chr:12q13.3
5	7	203227_s_at	SAS Chr:12q13.3
6	1	1555385_at	GALGT Chr:12q13.3
7	19	214951_at	SLC26A10 Chr:12q13
8	13	206435_at	GALGT Chr:12q13.3
9	3	200714_x_at	OS-9 Chr:12q13
10	20	215399_s_at	OS-9 Chr:12q13
11	15	212656_at	TSFM Chr:12q13-q14
12	17	214331_at	TSFM Chr:12q13-q14
13	18	214332_s_at	TSFM Chr:12q13-q14
14	2	1568706_s_at	--- ---
15	10	205539_at	AVIL Chr:12q13.2
16	27	226546_at	--- ---
17	36	238999_at	--- ---
18	14	211832_s_at	MDM2 Chr:12q14.3-q15
19	21	217373_x_at	MDM2 Chr:12q14.3-q15
20	22	217542_at	MGC5370 Chr:12q14.3
21	9	205386_s_at	MDM2 Chr:12q14.3-q15
22	25	225160_x_at	MGC5370 Chr:12q14.3
23	29	229711_s_at	MGC5370 Chr:12q14.3
24	35	238733_at	--- ---
25	23	218768_at	NUP107 Chr:12q14.3
26	28	227678_at	KUB3 Chr:12q13.2
27	37	241765_at	CPM Chr:12q14.3
28	8	204027_s_at	METTL1 Chr:12q13
29	11	205676_at	CYP27B1 Chr:12q13.1-q13.3
30	16	213861_s_at	DKFZP586D0919 Chr:12q13.2
31	26	226454_at	LOC92979 Chr:12q13.2
32	30	229917_at	--- ---
33	31	230001_at	LOC92979 Chr:12q13.2
34	34	235721_at	DTX3 Chr:12q13.2
35	38	244675_at	RGS8 Chr:1q25
36	32	235019_at	CPM Chr:12q14.3
37	33	235706_at	CPM Chr:12q14.3
38	24	224489_at	LOC284058 Chr:17q21.32
39	39	AFFX-M27830_5_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	14
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 20:04:12

S4_using_G13

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=14)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC